Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05704 ATGGCGGCTGAAGGTGACTCGCGTAAGAAGTTTGCTGAAAATTATGCTAAAGTAATTAATGAATCAAATGACACTATATATGGTCTCGTTCAGTGTACACCAGATTTGTCTAAACAAGACTGTATTAATTGTTTGGATTTCGCTTTCGGAGCCATTCGAGCATGGTGTGAAGATATGAAAGGAAAGAAATGGAAATTGGGAGTAACGGTCATGGCTATCGTTGTAGCAGTTGTAATGGCTGGCATTGGTATATGCGGTTATTTAAGAGGGAGAAAACGAAGACTACTAAATATGGCTGAATTTGAAAGCCAAGAGAAAAATGAAGATGAACTTGAAACTGAAGTTGAATCTGATAATGATCTTAAAGTTGGCGATTTGTTGCAATTTGACTTTGAAACCATCAGATTAGCTACAAGAAACTTCTCTAATGCAAATATGCTTGGTGAAGGTGGATTTGGAATTGTTTATAAGGGTATGCTCCCAGATGGACAAAATGTTGCTATCAAAAGGTTGGCAATCAATTCTAATCAAGGAGAAACAGAATTTAAGAATGAAGTGTTGCTGACAGGAAAGCTTCAACATCGAAATTTAGTTAAACTATTGGATCCAATCAAGCGTGCAAATTTGAATTGGGAAAGACGCCACAAAATCATTAAAGATATTGCCCGTGGTCTTGTTTATCTTCATGAGGATTCTCGATTACAAATTGTTCACCGTGACCTCAAAGTAAGTAACATTTTGCTAGATGAAGAGATGAATCCAAAAATTACAGATTTTGGTATTGCAAGATTGTTTGATGTCAATCAAACTCATGGCATGACAAAGACCGTTATTGGGACTTTTGGATATATGGCTCCGGAGTATATTAGACACGGACAATTTTCAGTTAAGTCAGATGTGTTCAGTTATGGTGTAATCATTTTAGAAATTGTGTGTGGTCGGAGAATCATCGAGAATCATGGCGGTGAGAATAAAGAGGATCTATTATACATTGCATGGAAAAATTGGAAGGCAGGGACAACTTCAGATATTGTAGATCCATTATTAGACCAAGGTTTTAATAAGAATGAAAAAAGAGAAGCATCCATGTTGGATTACTTTGTGTTCAAGAAGATATAG 1119 0.3628 MAAEGDSRKKFAENYAKVINESNDTIYGLVQCTPDLSKQDCINCLDFAFGAIRAWCEDMKGKKWKLGVTVMAIVVAVVMAGIGICGYLRGRKRRLLNMAEFESQEKNEDELETEVESDNDLKVGDLLQFDFETIRLATRNFSNANMLGEGGFGIVYKGMLPDGQNVAIKRLAINSNQGETEFKNEVLLTGKLQHRNLVKLLDPIKRANLNWERRHKIIKDIARGLVYLHEDSRLQIVHRDLKVSNILLDEEMNPKITDFGIARLFDVNQTHGMTKTVIGTFGYMAPEYIRHGQFSVKSDVFSYGVIILEIVCGRRIIENHGGENKEDLLYIAWKNWKAGTTSDIVDPLLDQGFNKNEKREASMLDYFVFKKI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05704 372 SUPERFAMILY Protein kinase-like (PK-like) 126 347 IPR011009 -
Trre1g05704 372 Pfam Protein kinase domain 209 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05704 372 ProSitePatterns Protein kinases ATP-binding region signature. 147 169 IPR017441 GO:0005524
Trre1g05704 372 Gene3D Transferase(Phosphotransferase) domain 1 200 366 - -
Trre1g05704 372 Pfam Salt stress response/antifungal 14 61 IPR002902 -
Trre1g05704 372 Gene3D Phosphorylase Kinase; domain 1 114 199 - -
Trre1g05704 372 Pfam Protein tyrosine and serine/threonine kinase 144 202 IPR001245 GO:0004672|GO:0006468
Trre1g05704 372 SMART serkin_6 141 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05704 372 ProSiteProfiles Protein kinase domain profile. 141 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05704 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Trre1g05704 372 Gene3D - 1 70 IPR038408 -
Trre1g05704 372 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 358 - -
Trre1g05704 372 ProSiteProfiles Gnk2-homologous domain profile. 1 78 IPR002902 -
Trre1g05704 372 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 114 211 - -
Trre1g05704 372 FunFam Lectin-domain containing receptor kinase A4.3 192 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05704 Trre-Chr1 62144051 62146798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05704 25 357 Receptor kinase-like Gene Family AT4G23230 41.089 8.06e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05704 Pkinase 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05704 - - tpra:123882259 428.713