Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05694 ATGGCAATTCTGATTGTATCTTGCAAGTTATCATTTTCCTTTTTTTATTTCCTCCTTCTTCTCATTATTAGTATTGTATCTCAAGCTAAAGCCCAGCCAGAGTTTTTGGACAAATCTTGTATAGACGATAATGGCAACTACACAGCCAATAGCACATATCAAACCAACCTCAACATCCTTTTGTCCAATCTCTCTACCAACACACAAATCAACTACGGTTTCTACAATTTCTCTTATGGCCAAAACACCGACAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCCGATGCTTGCCGTAAGTGTCTCAACGATTCAAGAGTTCTTCTGACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGAAAATTGCATGTTGCGCTACTCCAACCGATCAATATTTGGACTTATGGAACAATTTCCTTGGTTTAATTTAGCAAGCAGAAATATAGAAACAGAGGTGAATCAATATAATCGAGCTCTTGGGAACTTGATGAAGAAACTGAAAGAAAAAGCAGCATCAAGTAATGACTCTCGTGTTAAGTATGCTACCGAAATTCCAAATTGTTGTAGTAAAAAGTTAAGTGCTAGAGTTGTTGAACCAAGTTGTAATATTAGATATGAATCCTATCCCTTCTACGGTCCTCCACTTGTAGTAGGTCCTTCTCCGCTTGTAGTAGACCCAGATGAAACCTCTCGACCACAAGAAAAAAGCAAATCATCGAATAGTAGTAGTACTACCATTGCCATAGTTGTGCCTACTGTTGTTATACTTCTTTTTATGCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATTGCCATAGTATGGCAGGGGTAAATCTCGAAGAAATAGATGATAATGATGATGATATTGAAATCGCTGAGTCACTGCAATTCAACTTCCACACAATACGAGCTGCTACAGATAACTTTTCCGAAACTAATAAACTCGGACATGGAGGATTTGGAATTGTTTATCGGGGAAAACTCTCGAATGGACAAGTGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATATTGAATTTAAAAATGAAGTGCGCTTATTGGCTAAGCTTCAGCATCGGAATTTAGTCAAACTACTCGGCTTTTGTCTAGAAAGAAAAGAAAGGCTACTTGTTTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTTATATTTGATCCAATAAAGAAAGCACAATTAGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGGGGCCTTCTTTACCTTCACGAGGACTCTCGACTTCGTATTATACATCGTGATCTTAAAGCAAGTAACATTCTCTTGGAGGAAGATATGAATGCTAAAATATCAGATTTTGGGATGGCCAGGCTATTGCTTGTTGATCAAACTCAAGTAAATACAGATAAAATCGTTGGAACATATGGATATATGGCTCCTGAGTATGCTATGTTTGGAAAATTTACGGTAAAATCAGATGTTTTTAGTTTTGGCGTATTAGTTCTAGAGATTATAAGTGGCCAAAAAATTAGTCGCAATATTCTTCAAGGGCAGAGTCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAGGGTACAATCAGAAATATAATAGATCCATCATTAATCAACGGTTCACAAAATGAAATAATGAGATGCATTCACATTGGTTTACTCTGTGTTCAAGAAAATGTGGTTGACAGACCAACTATGGCAAACATTGCACTGATGGTAAGTAGTTATTCTTTCACTATGCCTCTACCTTTGGAGCCTGCTTCTTCCTTCGGCGGAAGAACTAGAAGCCTTACATACACGGAATCATCTGGGGAAGATAAAGGAACAACAAGTTCATTTGAATCCAAAAGTAAATCAGTAAATGAGAATACAATATGTCTTAATTAG 1932 0.3722 MAILIVSCKLSFSFFYFLLLLIISIVSQAKAQPEFLDKSCIDDNGNYTANSTYQTNLNILLSNLSTNTQINYGFYNFSYGQNTDKVNAIGLCRGDVKPDACRKCLNDSRVLLTRLCPNQKEAIGWYENCMLRYSNRSIFGLMEQFPWFNLASRNIETEVNQYNRALGNLMKKLKEKAASSNDSRVKYATEIPNCCSKKLSARVVEPSCNIRYESYPFYGPPLVVGPSPLVVDPDETSRPQEKSKSSNSSSTTIAIVVPTVVILLFMLTLIICICLRRNCHSMAGVNLEEIDDNDDDIEIAESLQFNFHTIRAATDNFSETNKLGHGGFGIVYRGKLSNGQVIAVKRLSRDSGQGDIEFKNEVRLLAKLQHRNLVKLLGFCLERKERLLVYEFVPNKSLDYFIFDPIKKAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLEEDMNAKISDFGMARLLLVDQTQVNTDKIVGTYGYMAPEYAMFGKFTVKSDVFSFGVLVLEIISGQKISRNILQGQSQEDLLSFAWRNWREGTIRNIIDPSLINGSQNEIMRCIHIGLLCVQENVVDRPTMANIALMVSSYSFTMPLPLEPASSFGGRTRSLTYTESSGEDKGTTSSFESKSKSVNENTICLN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05694 643 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Trre1g05694 643 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Trre1g05694 643 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 637 - -
Trre1g05694 643 CDD STKc_IRAK 323 581 - -
Trre1g05694 643 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Trre1g05694 643 Gene3D Phosphorylase Kinase; domain 1 282 392 - -
Trre1g05694 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Trre1g05694 643 MobiDBLite consensus disorder prediction 229 248 - -
Trre1g05694 643 Gene3D Transferase(Phosphotransferase) domain 1 393 594 - -
Trre1g05694 643 SUPERFAMILY Protein kinase-like (PK-like) 301 587 IPR011009 -
Trre1g05694 643 FunFam Cysteine-rich receptor-like protein kinase 10 281 392 - -
Trre1g05694 643 ProSiteProfiles Protein kinase domain profile. 317 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05694 643 Coils Coil 152 172 - -
Trre1g05694 643 Pfam Protein tyrosine and serine/threonine kinase 320 584 IPR001245 GO:0004672|GO:0006468
Trre1g05694 643 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Trre1g05694 643 SMART serkin_6 317 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05694 643 FunFam cysteine-rich receptor-like protein kinase 10 393 595 - -
Trre1g05694 643 MobiDBLite consensus disorder prediction 610 643 - -
Trre1g05694 643 Gene3D - 33 137 IPR038408 -
Trre1g05694 643 Gene3D - 184 217 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05694 Trre-Chr1 62088343 62091256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05694 9 602 Receptor kinase-like Gene Family AT4G21410 47.278 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05694 PK_Tyr_Ser-Thr 7.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05694 - - gmx:100791056 760.755