Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05690 ATGGCAATTGTGATTGTATCTTGCAAGTTATCATTTTCCTTTTTTTATTTTCTCCTTCTTCTCATTATTAGCATTGTATCTCAAGCTAAAGCCCAGCCAAATTTTTTGGACAAATCTTGTGTAAACGATAATGGCAACTACACAGCCAATAGCACATATCAAAACAACCTTAACATCCTTTTGTCCAATCTCTCTACCAACACAGAAATCAACTATGGTTTCTACAATTTCTCTTATGGCCAAAACAACGATAAAGTAAACGCCATTGGATTCTGCAGAGGAGATGTTAAACCTGATGTTTGCCGCAATTGTCTTAATGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGACAACTGCATGTTGCGCTACTCTAACCGATCAATATTTGGCATTATGGAACAATTTCCTTGGTCTTATATAGCAAGCAGAGATATAGAAACAGAGGTGAATCAATATAATCGAGCTCTTGGGAACTTGATGAAGAAATTGAAAGAAAAAGCAGCATCAAGTAATGACTCTCGTGTTAAGTATGCTACGGGTAATGAAACTGATGTGAACTTGAACTTTGAAACCATATATGGTCTTGTGCAGTGTACACCGGATTTATCATCACAAGATTGCATGGATTGTTTAAATGGTGCTATCTCAGAAATTCCATTTTGTTGTAGTAAAATGTATAGTGTTAGAGTTGTTGAACCAAGTTGTAATATTAGATATGAATCCTATCCCTTCTACGGTCCTTCGCTTGTAGTAGGTCCTCCTCCGCTTGTAGTAGACCCAGATGAAACCTCTCGACCACAAGAAAAAAGCAAATCATCTCATACTGCCATTGCCATAGTTGTTGTGCCTACTATTGTTGCAGTTGCTGTTCTGCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATCGCCATAGTATGGCAGGGTCAAATCTCGAAGGTGAAGACGAAATGATGATTGCTGAGTCATTGCAATTTAATTTTGATATCATACGAGTTGCTACGAATGATTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAATTGTTTATCGGGGCCAACTACCTAATGGACAAATGATTGCTGTCAAAAGATTGTCCACAAATTCTGGCCAAGGAGACTTGGAATTCAAAAATGAAGTACTTTTAGTAGCCAAACTTCAACATCGAAATTTAGTTAGGCTACTTGGTTTTAGTTTGGAAAGGAGAGAAAGATTGCTTATTTATGAATTTGTTCCAAATAAAAGTCTTGATTACTTTATATTCGATCTAACAAGGAAAACACAATTGAATTGGGAAAAGCGCTGCAATATCATAAAAGGTATTGCCCGTGGTATTCTTTATCTTCATGAGGATTCTCGCTTGCGAATTATACACCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGACGAGATGAATCCTAAGATATCTGATTTTGGATTGGCAAGACTGTTTGATATCGGTCAAACTCAAGGAAGTACAAATAGAATCGTTGGAACCTATGGATATATGGCACCTGAGTATGTTATGCTTGGAGAATTTTCGGTAAAATCGGATGTTTTTAGTTTTGGAGTATTAGTTCTTGAAACTATAAGTGGTCATAAAAATAGTGCAAACATTTGTCATGGGGAGGATGTGGAGTATCTATTGACTTATGCATGGAGAAGCTGGAGAGAAGGGAAAGCTATAAATATAATAGATCCATCATTAATAAGCAGCAACATTTCAAAAGATGAAATAATGAGATGCATCCATATTGGTTTACTGTGTGTTCAAGAAAATGTAGTTGACAGACCAACCATGGCTTCTGTTGCTCTTATGCTTAATAGTAATTCTCTCACTCTCTCAATACCTTCAAAACCTGCATATTTTATGGGAAGTGCAAGTAGAACACTACCAGACATGCAGCAACAAGTTGATAATTTAAGTGCAACAAGATCGAATGAATCGGTGAACCAAATTTCAATTACTGATCTATACCCACGATAG 2028 0.3644 MAIVIVSCKLSFSFFYFLLLLIISIVSQAKAQPNFLDKSCVNDNGNYTANSTYQNNLNILLSNLSTNTEINYGFYNFSYGQNNDKVNAIGFCRGDVKPDVCRNCLNDSRVLLTRLCPNQKEAIGWYDNCMLRYSNRSIFGIMEQFPWSYIASRDIETEVNQYNRALGNLMKKLKEKAASSNDSRVKYATGNETDVNLNFETIYGLVQCTPDLSSQDCMDCLNGAISEIPFCCSKMYSVRVVEPSCNIRYESYPFYGPSLVVGPPPLVVDPDETSRPQEKSKSSHTAIAIVVVPTIVAVAVLLTLIICICLRRNRHSMAGSNLEGEDEMMIAESLQFNFDIIRVATNDFSDSNKLGQGGFGIVYRGQLPNGQMIAVKRLSTNSGQGDLEFKNEVLLVAKLQHRNLVRLLGFSLERRERLLIYEFVPNKSLDYFIFDLTRKTQLNWEKRCNIIKGIARGILYLHEDSRLRIIHRDLKASNILLDDEMNPKISDFGLARLFDIGQTQGSTNRIVGTYGYMAPEYVMLGEFSVKSDVFSFGVLVLETISGHKNSANICHGEDVEYLLTYAWRSWREGKAINIIDPSLISSNISKDEIMRCIHIGLLCVQENVVDRPTMASVALMLNSNSLTLSIPSKPAYFMGSASRTLPDMQQQVDNLSATRSNESVNQISITDLYPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05690 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Trre1g05690 675 Gene3D Transferase(Phosphotransferase) domain 1 424 629 - -
Trre1g05690 675 Gene3D - 33 137 IPR038408 -
Trre1g05690 675 Gene3D - 148 254 IPR038408 -
Trre1g05690 675 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Trre1g05690 675 FunFam cysteine-rich receptor-like protein kinase 10 424 628 - -
Trre1g05690 675 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Trre1g05690 675 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Trre1g05690 675 SMART serkin_6 348 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05690 675 CDD STKc_IRAK 354 622 - -
Trre1g05690 675 FunFam Cysteine-rich receptor-like protein kinase 10 311 423 - -
Trre1g05690 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 674 - -
Trre1g05690 675 FunFam Cysteine-rich receptor-like protein kinase 10 147 254 - -
Trre1g05690 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Trre1g05690 675 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Trre1g05690 675 Pfam Salt stress response/antifungal 157 252 IPR002902 -
Trre1g05690 675 SUPERFAMILY Protein kinase-like (PK-like) 332 621 IPR011009 -
Trre1g05690 675 Pfam Protein kinase domain 349 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05690 675 ProSiteProfiles Protein kinase domain profile. 348 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05690 675 Gene3D Phosphorylase Kinase; domain 1 312 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05690 Trre-Chr1 62054064 62057004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05690 9 675 Receptor kinase-like Gene Family AT4G21410 47.971 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05690 Pkinase 6.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05690 - - gmx:100791056 784.637