Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05689 ATGGCAATTGTGATTGTATCTTGCAAGTTATCATTTTCCTTTTTTTATTTTCTCCTTCTTCTCATTATTAGCATTGTATCTCAAGCTAAAGCCCAGCCAAATTTTTTGGACAAATCTTGTGTAAACGATAATGGCAACTACACAGCCAATAGCACATATCAAAACAACCTTAACATCCTTTTGTCCAATCTCTCTACCAACACAGAAATCAACTATGGTTTCTACAATTTCTCTTATGGCCAAAACAACGATAAAGTAAACGCCATTGGATTCTGCAGAGGAGATGTTAAACCTGATGTTTGCCGCAATTGTCTTAATGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGACAACTGCATGTTGCGCTACTCTAACCGATCAATATTTGGCATTATGGAACAATTTCCTTGGTCTTATATAGCAAGCAGAGATATAGAAACAGAGGTGAATCAATATAATCGAGCTCTTGGGAACTTGATGAAGAAATTGAAAGAAAAAGCAGCATCAAGTAATGACTCTCGTGTTAAGTATGCTACGGGTAATGAAACTGATGTGAACTTGAACTTTGAAACCATATATGGTCTTGTGCAGTGTACACCGGATTTATCATCACAAGATTGCATGGATTGTTTAAATGGTGCTATCTCAGAAATTCCATTTTGTTGTAGTAAAATGTATAGTGTTAGAGTTGTTGAACCAAGTTGTAATATTAGATATGAATCCTATCCCTTCTACGGTCCTTCGCTTGTAGTAGGTCCTCCTCCGCTTGTAGTAGACCCAGATGAAACCTCTCGACCACAAGAAAAAAGCAAATCATCTCATACTGCCATTGCCATAGTTGTTGTGCCTACTATTGTTGCAGTTGCTGTTCTGCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATCGCCATAGTATGGCAGGGTCAAATCTCGAAGCTATCATGGGAAAATATGATGATGAAGGTGAAGACGAAATGATGATTGCTGAGTCATTGCAATTTAATTTTGATATCATACGAGTTGCTACGAATGATTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAATTGTTTATCGGGGCCAACTACCTAATGGACAAATGATTGCTGTCAAAAGATTGTCCACAAATTCTGGCCAAGGAGACTTGGAATTCAAAAATGAAGTACTTTTAGTAGCCAAACTTCAACATCGAAATTTAGTTAGGCTACTTGGTTTTAGTTTGGAAAGGAGAGAAAGATTGCTTATTTATGAATTTGTTCCAAATAAAAGTCTTGATTACTTTATATTCGATCTAACAAGGAAAACACAATTGAATTGGGAAAAGCGCTGCAATATCATAAAAGGTATTGCCCGTGGTATTCTTTATCTTCATGAGGATTCTCGCTTGCGAATTATACACCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGACGAGATGAATCCTAAGATATCTGATTTTGGATTGGCAAGACTGTTTGATATCGGTCAAACTCAAGGAAGTACAAATAGAATCGTTGGAACCTATGGATATATGGCACCTGAGTATGTTATGCTTGGAGAATTTTCGGTAAAATCGGATGTTTTTAGTTTTGGAGTATTAGTTCTTGAAACTATAAGTGGTCATAAAAATAGTGCAAACATTTGTCATGGGGAGGATGTGGAGTATCTATTGACTTATGCATGGAGAAGCTGGAGAGAAGGGAAAGCTATAAATATAATAGATCCATCATTAATAAGCAGCAACATTTCAAAAGATGAAATAATGAGATGCATCCATATTGGTTTACTGTGTGTTCAAGAAAATGTAGTTGACAGACCAACCATGGCTTCTGTTGCTCTTATGCTTAATAGTAATTCTCTCACTCTCTCAATACCTTCAAAACCTGCATATTTTATGGGAAGTGCAAGTAGAACACTACCAGACATGCAGCAACAAGTTGATAATTTAAGTGCAACAAGATCGAATGAATCGGTGAACCAAATTTCAATTACTGATCTATACCCACGATAG 2055 0.364 MAIVIVSCKLSFSFFYFLLLLIISIVSQAKAQPNFLDKSCVNDNGNYTANSTYQNNLNILLSNLSTNTEINYGFYNFSYGQNNDKVNAIGFCRGDVKPDVCRNCLNDSRVLLTRLCPNQKEAIGWYDNCMLRYSNRSIFGIMEQFPWSYIASRDIETEVNQYNRALGNLMKKLKEKAASSNDSRVKYATGNETDVNLNFETIYGLVQCTPDLSSQDCMDCLNGAISEIPFCCSKMYSVRVVEPSCNIRYESYPFYGPSLVVGPPPLVVDPDETSRPQEKSKSSHTAIAIVVVPTIVAVAVLLTLIICICLRRNRHSMAGSNLEAIMGKYDDEGEDEMMIAESLQFNFDIIRVATNDFSDSNKLGQGGFGIVYRGQLPNGQMIAVKRLSTNSGQGDLEFKNEVLLVAKLQHRNLVRLLGFSLERRERLLIYEFVPNKSLDYFIFDLTRKTQLNWEKRCNIIKGIARGILYLHEDSRLRIIHRDLKASNILLDDEMNPKISDFGLARLFDIGQTQGSTNRIVGTYGYMAPEYVMLGEFSVKSDVFSFGVLVLETISGHKNSANICHGEDVEYLLTYAWRSWREGKAINIIDPSLISSNISKDEIMRCIHIGLLCVQENVVDRPTMASVALMLNSNSLTLSIPSKPAYFMGSASRTLPDMQQQVDNLSATRSNESVNQISITDLYPR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05689 684 Pfam Salt stress response/antifungal 157 252 IPR002902 -
Trre1g05689 684 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Trre1g05689 684 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Trre1g05689 684 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Trre1g05689 684 SMART serkin_6 357 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05689 684 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Trre1g05689 684 Gene3D Transferase(Phosphotransferase) domain 1 433 638 - -
Trre1g05689 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Trre1g05689 684 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Trre1g05689 684 Gene3D - 148 254 IPR038408 -
Trre1g05689 684 Gene3D - 33 137 IPR038408 -
Trre1g05689 684 SUPERFAMILY Protein kinase-like (PK-like) 338 630 IPR011009 -
Trre1g05689 684 FunFam Cysteine-rich receptor-like protein kinase 10 322 432 - -
Trre1g05689 684 FunFam Cysteine-rich receptor-like protein kinase 10 147 254 - -
Trre1g05689 684 CDD STKc_IRAK 363 631 - -
Trre1g05689 684 Gene3D Phosphorylase Kinase; domain 1 321 432 - -
Trre1g05689 684 Pfam Protein kinase domain 358 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05689 684 FunFam cysteine-rich receptor-like protein kinase 10 433 637 - -
Trre1g05689 684 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 683 - -
Trre1g05689 684 ProSiteProfiles Protein kinase domain profile. 357 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05689 Trre-Chr1 62054064 62057004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05689 9 684 Receptor kinase-like Gene Family AT4G21410 47.681 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05689 Pkinase 6.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05689 - - mtr:11442310 798.89