Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05688 ATGCATATCTTCAAATCCTCTAAAACAACTACAACAATAGCAACACAATTGATTCTTCTTTCATCCTTGTTAACTTTACTTACCTTCTCAATTGAAGCATCTCCAGTATACACCTCCCACGCCTGCACAACACTGCCAGGATCCACCTATTACAAACCAAATTCTAATTTCCAAACCGCTTTAAAAACTCTTCTCTCTTCCCTCATCTCAAACTCCACCTCTCACAACGGTTTCTACAACACCAACATCCCTCTCTTCAATTCTCCCAACGACTTAAAAGGTCTCTTCCTCTGCCGTGCCGACGTCACTCCCACCACCTGTCAAAACTGCGTAACCGCCGCAGCTAATAACATCACAAAATTCTGCAATAACGAAACAGAGTCTATAATCTGGTATGATGAGTGCTTATTGCGTTACTCTAATACTTCTTTCTTGAATCATATAGTTCCAGCAACAACCTTGGAATCTGTTGAGAGTGTTCCTGATTCTCAAGTTTCGCAATTCGGTGATTTTATTGCAAAGCTTTTGAAGGATTTAGCAAATGAAGCTGTGAATTCTAATTTAGGTCAGAAGAAATTTTCTGCAAAAGAAGATAATTTCTTGGATTCTATCAAGATATATTCTTTGGCACAGTGTACACCTGATTTGTCCACTTTTGATTGTAACACTTGCTTGCAAAGTGCTATTAGTTCTATTGGAGATTGTTGTAGTACGAAACGAGGCGCAAGATCACTTCTTCCGAGTTGTAATATTCGATATGAATCTTATCCGTTTTATAATGTTTCTGCTGTTTCCACTCAACCACAACTTCAATCTCCTTCTTCAGGGAAAAGCAATGTTTCTATAATTGTTGCGATTGTTGTTCCAATTGTTGTTGTTGTGGTGCTTTTCATTATCGGCTGTTACTTCCTGCGTAAGAGGGCAATCAAGAAGTATAAGTATAGTGCTACATACATCCGGGATTCATCTTCAATTCTGAGGGGGGATTTTACTGATATAGAGTGTTTGCAATTTGACTTCACCTCAATTGAAGCTGCCACAAATTGCTTCTCCGAAGAGAACAAGATCGGCCAAGGTGGATTTGGCGTGGTTTATAAGGGTATCCTTCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCAATGACCTCCTTGCAGGGTACAATAGAGTTCAGGAATGAAGCATCCCTTGTGGCCAAACTTCAACATAGAAATTTAGTGAGGATGTTTGGATTTTGTTTGGAAGGCAGGGAGAAGATACTTGTCTATGAATACATAGCAAATAAAAGCCTTGATCACTTTCTATTCGATCCTGTAAAGCAAAGGGAGTTAGATTGGTCAATACGGTACAAGATTATAGTTGGCATCGCTCGAGGGATTCTTTATCTCCACGAAGACTCCCAACTTAGAATTATTCACCGTGATCTCAAAGCTAGCAATGTTCTATTAGATGAGAACATGAACCCAAAGATTTCAGATTTTGGGATGGCTAAAATTTTCCAGGCAGACCAGACTCAAGTAAATACAGGAAGGATAGTCGGGACTTACGGCTACATGTCTCCAGAATATGCAATGCGTGGACAGTTCTCAGTCAAATCAGATGTGTTTAGCTTCGGTGTCTTAGTTTTGGAAATTGTGAGTGGCAAGAAGAATACCGATTTAAATCATTGGAATAATGCTGATGACCTCTTAAGCTATGCTTGGAAAAAATGGTCAGAGCAAACACCTTTGGAGTTACTGGATCCAACACTACGAGGTTCTTATTCAAGAAACGAAGTTATCAGATGCATCCATATTGGTTTGTTATGTGTTCAGGAAAATCCACTTGACAGGCCATCAATGGAAACTATTGCACTTATGCTTAACAGTTATTCAGTTACCATGTCATTACCTCAGCAGCCACCTTCTTTCCTGCGTGGAAGAACACCTGATAGAATAAAGCAAGGGCTAGATTCTGATCAGTCCACCACCTGTTCAATTCCATGGTCTGTGAATGAAGTATCTATTACCGAAGTACACCCACGATAA 2028 0.3989 MHIFKSSKTTTTIATQLILLSSLLTLLTFSIEASPVYTSHACTTLPGSTYYKPNSNFQTALKTLLSSLISNSTSHNGFYNTNIPLFNSPNDLKGLFLCRADVTPTTCQNCVTAAANNITKFCNNETESIIWYDECLLRYSNTSFLNHIVPATTLESVESVPDSQVSQFGDFIAKLLKDLANEAVNSNLGQKKFSAKEDNFLDSIKIYSLAQCTPDLSTFDCNTCLQSAISSIGDCCSTKRGARSLLPSCNIRYESYPFYNVSAVSTQPQLQSPSSGKSNVSIIVAIVVPIVVVVVLFIIGCYFLRKRAIKKYKYSATYIRDSSSILRGDFTDIECLQFDFTSIEAATNCFSEENKIGQGGFGVVYKGILPNGQEIAVKRLSMTSLQGTIEFRNEASLVAKLQHRNLVRMFGFCLEGREKILVYEYIANKSLDHFLFDPVKQRELDWSIRYKIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDLNHWNNADDLLSYAWKKWSEQTPLELLDPTLRGSYSRNEVIRCIHIGLLCVQENPLDRPSMETIALMLNSYSVTMSLPQQPPSFLRGRTPDRIKQGLDSDQSTTCSIPWSVNEVSITEVHPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05688 675 SMART serkin_6 350 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05688 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 48 673 - -
Trre1g05688 675 FunFam Cysteine-rich receptor-like protein kinase 10 310 425 - -
Trre1g05688 675 Pfam Salt stress response/antifungal 163 256 IPR002902 -
Trre1g05688 675 Pfam Salt stress response/antifungal 48 141 IPR002902 -
Trre1g05688 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Trre1g05688 675 FunFam Cysteine-rich receptor-like protein kinase 10 152 258 - -
Trre1g05688 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 35 144 - -
Trre1g05688 675 ProSiteProfiles Gnk2-homologous domain profile. 39 144 IPR002902 -
Trre1g05688 675 Gene3D Transferase(Phosphotransferase) domain 1 426 632 - -
Trre1g05688 675 FunFam cysteine-rich receptor-like protein kinase 10 426 628 - -
Trre1g05688 675 Gene3D Phosphorylase Kinase; domain 1 313 425 - -
Trre1g05688 675 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Trre1g05688 675 Gene3D - 37 144 IPR038408 -
Trre1g05688 675 Gene3D - 154 258 IPR038408 -
Trre1g05688 675 ProSiteProfiles Gnk2-homologous domain profile. 150 258 IPR002902 -
Trre1g05688 675 CDD STKc_IRAK 356 622 - -
Trre1g05688 675 SUPERFAMILY Protein kinase-like (PK-like) 335 643 IPR011009 -
Trre1g05688 675 ProSiteProfiles Protein kinase domain profile. 350 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05688 675 Pfam Protein tyrosine and serine/threonine kinase 353 618 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05688 Trre-Chr1 62046178 62049110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05688 19 675 Receptor kinase-like Gene Family AT4G05200 49.335 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05688 PK_Tyr_Ser-Thr 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05688 - - cam:101512516 1014.6