Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05685 ATGAATTCTTATTCCACCATGTCTTCGAATTCCTTCAACCTGTTTTTTCTGTTCATCCTAATAACCTTTCTCCTCCTTAGCTCAAATACTAAAGCACAAAACCTCCATTTTCTCTACCATGCTTGTTCAGAGAATGACACCACCACCTACAAATCAAACCTCAGAACCCTTTTTTCTTCATTATCTTCTAACGCTACCAAAGAATTCTACAACACTACAGTCACAAACAGAACCCCCTCAAACACGGTATACGGCCTATACATGTGCAGAGGCGATGTTTTCTCTTCCATCTGCCAGCAATGTGTTAGGAACGCGACACAGAAACTATCAACAGACTGCTCCTCATCCAAACAAGCTGTAATCTGGTACGATGAATGCATGGTTCGATACTCCAACATCTCTTTTTTCTCAACAATGGCTACATATCCCGGTATTTCCATGATGAACACTGCGAATATCACGAACCAGACAAGCTTCATGAGTTTGTTGTTTGATACCATGAATGAATCAGCTGATAAAGCGGCGAACTCTTCTGTTGGTGCTAAGAAATACGCAACAAAGGAAGCTAGTGTATCTAGTTTTCAGACATTTTATTGTTTGACTCAGTGTACAGAAGATTTATCACAGCAAGACTGCAGCACGTGTCTTAGTGATGCTATAGGTTATCTTCCTCAGTGTTGTAATGGAAAGCAAGGAGGGAGAGTTCTGTTTCCTAGCTGTAATATTAGATATGAATTGTACCCTTTTTATCAAAACCTTACTCCCTCAGCATCACCACCGCCTTCAGCAGCACCAGGGCTTGTTCCTCCAACATCCAATCCTAATTTGGGAGGAAGTAGTGGGATCTCATCAGGGACAATTGTTGCAATTGTGGTTCCAATTTCCGTGGCCACGCTGCTATTAATCGTGGGACTTTGTTTCTTAAGTAAAAGAGTATGGAAGAAGAAGCCTGACTCTGCTCAAGATCCAAAAACTGAAACTGATATTAGCACCGTGGAATCCTTGAGATTTGATTTGAGTACGCTTGAAGAAGCCACAAACAAATTCTCGGATGCTAATAAGCTAGGTGAAGGTGGATTTGGCGAGGTTTTCAAGGGCTCGCTTGCAAGCGGACAAGAAATAGCTGTCAAGAGACTCTCTAAAAACTCGGGACAAGGCGGAGAACAATTTAAGAATGAAGTTGAGTTAGTTGCCCAGCTTCAACATAGAAATTTAGCTAGGCTTCTAGGATTTTGCTTGGAAGGAGAAGAAAAGATACTTGTTTATGAATATGTGGCCAACAAAAGCCTTGACTATATTCTTTTTGATCCTGAAAAACAAAGGCTGTTGGATTGGACAAGGCGTTACAAGATTATTGGAGGGGTTGCACGAGGCATTACATATCTTCACGAAGATTCTAGGCTTAAAATTATTCATCGTGATCTCAAAGCTAGCAACATATTGTTGGATGAAAATATGAATCCAAAAATCTCCGACTTTGGCATGGCAAAATTATTCGGAGTGGATCAAACTCAAGGAAATACCAGTAGAATAGTAGGCACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGAGAGTTCTCTATTAAGTCTGATGTATACAGTTTTGGAGTCCTCGTTATGGAGATTATAAGTGGCAAGAAAAACAGCTCTTTCTACGAAACAGGTGTTGCTGAGGATTTAGTAAGCTATGCCTGGAAACTTTGGAAGAATGGAACACCCTTGGAATTGGTTGACCAGACAGTAATAGAATCCTATACTCCAAATGAAGCTATCAGATGCATCCATATTGGTTTACTATGTGTTCAAGAAGATCCAGAAGATAGACCTACAATGGCAACAATAGTGCTCATGTTAGATAGTTACACTGTTACGCTACCGGTACCTAAGCAACCTGCATTTTTTCTACACAGTGGAAGTGTTCCAAACATGCCGACGATACAAATCAGTCAATCTGAATCTACTACCAATTGA 1977 0.4052 MNSYSTMSSNSFNLFFLFILITFLLLSSNTKAQNLHFLYHACSENDTTTYKSNLRTLFSSLSSNATKEFYNTTVTNRTPSNTVYGLYMCRGDVFSSICQQCVRNATQKLSTDCSSSKQAVIWYDECMVRYSNISFFSTMATYPGISMMNTANITNQTSFMSLLFDTMNESADKAANSSVGAKKYATKEASVSSFQTFYCLTQCTEDLSQQDCSTCLSDAIGYLPQCCNGKQGGRVLFPSCNIRYELYPFYQNLTPSASPPPSAAPGLVPPTSNPNLGGSSGISSGTIVAIVVPISVATLLLIVGLCFLSKRVWKKKPDSAQDPKTETDISTVESLRFDLSTLEEATNKFSDANKLGEGGFGEVFKGSLASGQEIAVKRLSKNSGQGGEQFKNEVELVAQLQHRNLARLLGFCLEGEEKILVYEYVANKSLDYILFDPEKQRLLDWTRRYKIIGGVARGITYLHEDSRLKIIHRDLKASNILLDENMNPKISDFGMAKLFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSIKSDVYSFGVLVMEIISGKKNSSFYETGVAEDLVSYAWKLWKNGTPLELVDQTVIESYTPNEAIRCIHIGLLCVQEDPEDRPTMATIVLMLDSYTVTLPVPKQPAFFLHSGSVPNMPTIQISQSESTTN 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05685 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre1g05685 658 SUPERFAMILY Protein kinase-like (PK-like) 334 648 IPR011009 -
Trre1g05685 658 Pfam Salt stress response/antifungal 45 132 IPR002902 -
Trre1g05685 658 Pfam Salt stress response/antifungal 151 247 IPR002902 -
Trre1g05685 658 SMART serkin_6 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05685 658 FunFam Cysteine-rich receptor-like protein kinase 10 312 424 - -
Trre1g05685 658 Pfam Protein tyrosine and serine/threonine kinase 353 619 IPR001245 GO:0004672|GO:0006468
Trre1g05685 658 Gene3D Phosphorylase Kinase; domain 1 310 424 - -
Trre1g05685 658 FunFam Cysteine-rich receptor-like protein kinase 25 143 249 - -
Trre1g05685 658 Gene3D Transferase(Phosphotransferase) domain 1 425 627 - -
Trre1g05685 658 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Trre1g05685 658 FunFam cysteine-rich receptor-like protein kinase 10 425 627 - -
Trre1g05685 658 Gene3D - 144 249 IPR038408 -
Trre1g05685 658 Gene3D - 34 135 IPR038408 -
Trre1g05685 658 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 645 - -
Trre1g05685 658 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 35 135 - -
Trre1g05685 658 ProSiteProfiles Gnk2-homologous domain profile. 141 249 IPR002902 -
Trre1g05685 658 ProSiteProfiles Protein kinase domain profile. 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05685 658 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Trre1g05685 658 CDD STKc_IRAK 355 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05685 Trre-Chr1 62037289 62040383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05685 17 639 Receptor kinase-like Gene Family AT4G05200 54.003 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05685 PK_Tyr_Ser-Thr 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05685 - - mtr:25485264 1063.14