Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05684 ATGATTATCAAACTATTATCTAAGATATTTACGCTTATCACTCTTATATTAATTGTTTCCATAACAAAAACATCTGCATCTGTGTTCAACAATGTTACTTGTACAAACAACAAAACATTCATACAAAACAGTACTTTTGATTCAAACCTTAAAACCCTTCTGTCATCACTTTCTTCTAATGTAACAAATGATGTTAGATTCTTCAACACAACATCAGGAAAAGGTTTAGACAAAGTCTATGGTCTCTATATGTGTCGTGGAGATGTTCCATTTGCTTTATGCAGAGAGTGTATTGGTTTTGCAACACTAACAATTCCAAAATCATGTCCTTCTTCAAAAGAAGCTGTGATTTGGTACAACGAGTGTTTGTTAAGATATTCATATAGATTCATCTTTTCAAAAATGGAAACTTTACCAAGATATAAGATTGAGATTCCAATGGGGGATCCTGTTTTGTTACAAAGTAAAGGGTTTTATGCTGCTTTAAGATCTGTTTTGAATGTGCTTCCAAATGAAGCTGCAGTTTCTATTGGTGGTTTTAATAAATATGCTGTTAAACAAGAAAATGCTTCTGTTAGTGTGACGCTTTACGGTCTTGCTCAGTGTACGCCGGACTTGTCAGCTGGGGATTGTAGGCGGTGTATTGAGGACGCGGCCGCGGAGTTTCCTAAGGCTTGTTGTGGAGGTAGCATAGGGGAAACTATTTTGTTTCCAAGCTGTTTTGTTAGATATGAGACTTATCCGTTTTATTTGCATTCTGGAACATCGGCATCAATATCAACTTCGGATAAGGGGGGAAGAAATATTTCAACACATTTGATTGCCATCATAGTTGTCTTGGTTGTCATTTTGGTGGTGATTTTTTGCATTGGCTGCTATATCTTATGGATAAAAGCGAAGAAGAGACGCAAGGCTAGTCACAGAGAAAACCTTGGGCTTGAATTTCGTAACACTGAGTCCTTGGAATTTGATTTTGCTACAATTGAAATAGCAACAAACAATTTTTCTGATGATAGCAAAATAGGCAAAGGGGGATATGGACAAGTCTACAAGGGAACACTTCCTAATGGACAAGAAATAGCTGTGAAGAGACTGTCGAAAACTTCTGGCCAAGGAGCAGAAGAATTCAAAAATGAAGTGATGTTAATAGCCAAACTTCAACACAGAAATTTGGTGAGGTTAATAGGATTTTGCCTTGAAGATCAAGAAAAGATACTAATCTATGAATATGTGCCTAACAAAAGTCTTGATCACTTCCTATTTGATTCTCGGAAGCAAAAAGAATTAACTTGGCCTGAACGGTATAATATCATTAAAGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTCAAGATTATTCATCGCGATATTAAACCGAGCAATGTACTTCTAGATAACAACATGAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGATATAGAGCAAGTTCAAGGACACACAAATAGAGTTGTCGGAACATATGGTTACATGTCTCCAGAATATGCAATGCACGGACAATTTTCAGTGAAGTCTGATGTTTTCAGTTTTGGAGTTATGGTTCTCGAGATTCTTAGCGGAAAAAAGAATTCCTGTAGTTTTGAATCATGTCGTGTCGATGATCTCTTGAGTTATGCTTGGAATCAATGGCATGGTGAAACTCCATTTGAAATGCTGGATCCAATTATGCAAGAATCTTATACTCCAAATGAAGTAGAAAAATGTGTGCAAATTGGTTTATTGTGTGTCCAAGAAAATCCAGATGATAGGCCTACAATGGGAACTGTTGTTTCATATCTTACTAATGTCTCAGTTGATATGCCATTTCCAATGGAACCAGCATTTTTCATGCATGGCAGAACAAGAAGAAATTCAGGCAATTCAGCTGAACATGAATCATATTCAGACTTTACACTAAAAAAATATTGGAAAGAAATGATTGGATGGAGACAATCAGTCTAA 1980 0.3631 MIIKLLSKIFTLITLILIVSITKTSASVFNNVTCTNNKTFIQNSTFDSNLKTLLSSLSSNVTNDVRFFNTTSGKGLDKVYGLYMCRGDVPFALCRECIGFATLTIPKSCPSSKEAVIWYNECLLRYSYRFIFSKMETLPRYKIEIPMGDPVLLQSKGFYAALRSVLNVLPNEAAVSIGGFNKYAVKQENASVSVTLYGLAQCTPDLSAGDCRRCIEDAAAEFPKACCGGSIGETILFPSCFVRYETYPFYLHSGTSASISTSDKGGRNISTHLIAIIVVLVVILVVIFCIGCYILWIKAKKRRKASHRENLGLEFRNTESLEFDFATIEIATNNFSDDSKIGKGGYGQVYKGTLPNGQEIAVKRLSKTSGQGAEEFKNEVMLIAKLQHRNLVRLIGFCLEDQEKILIYEYVPNKSLDHFLFDSRKQKELTWPERYNIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNNMNPKISDFGMARMVDIEQVQGHTNRVVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEILSGKKNSCSFESCRVDDLLSYAWNQWHGETPFEMLDPIMQESYTPNEVEKCVQIGLLCVQENPDDRPTMGTVVSYLTNVSVDMPFPMEPAFFMHGRTRRNSGNSAEHESYSDFTLKKYWKEMIGWRQSV 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05684 659 FunFam Cysteine-rich receptor-like protein kinase 10 297 410 - -
Trre1g05684 659 SUPERFAMILY Protein kinase-like (PK-like) 320 633 IPR011009 -
Trre1g05684 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Trre1g05684 659 Gene3D Phosphorylase Kinase; domain 1 296 410 - -
Trre1g05684 659 SMART serkin_6 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05684 659 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 635 - -
Trre1g05684 659 Pfam Salt stress response/antifungal 156 247 IPR002902 -
Trre1g05684 659 Pfam Salt stress response/antifungal 34 127 IPR002902 -
Trre1g05684 659 FunFam cysteine-rich receptor-like protein kinase 10 411 613 - -
Trre1g05684 659 Pfam Protein tyrosine and serine/threonine kinase 339 606 IPR001245 GO:0004672|GO:0006468
Trre1g05684 659 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Trre1g05684 659 Gene3D Transferase(Phosphotransferase) domain 1 411 614 - -
Trre1g05684 659 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Trre1g05684 659 ProSiteProfiles Protein kinase domain profile. 335 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05684 659 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Trre1g05684 659 Coils Coil 659 659 - -
Trre1g05684 659 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Trre1g05684 659 CDD STKc_IRAK 341 608 - -
Trre1g05684 659 Gene3D - 152 249 IPR038408 -
Trre1g05684 659 Gene3D - 27 130 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05684 Trre-Chr1 62030865 62035506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05684 9 641 Receptor kinase-like Gene Family AT4G05200 43.313 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05684 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05684 - - mtr:25485264 1090.49