LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05683	ATGATGATTATCAAACTATTATCTAAGATATTTACGCTTATCACTCTTATATTAATTGTTTCCATAACAAAAACATCTGCATCTGTGTTCAACAATGTTACTTGTACAAACAACAAAACATTCATACAAAACAGTACTTTTGATTCAAACCTTAAAACCCTTCTGTCATCACTTTCTTCTAATGTAACAAATGATGTTAGATTCTTCAACACAACATCAGGAAAAGGTTTAGACAAAGTCTATGGTCTCTATATGTGTCGTGGAGATGTTCCATTTGCTTTATGCAGAGAGTGTATTGGTTTTGCAACACTAACAATTCCAAAATCATGTCCTTCTTCAAAAGAAGCTGTGATTTGGTACAACGAGTGTTTGTTAAGATATTCATATAGATTCATCTTTTCAAAAATGGAAACTTTACCAAGATATAAGATTGAGATTCCAATGGGGGATCCTGTTTTGTTACAAAGTAAAGGGTTTTATGCTGCTTTAAGATCTGTTTTGAATGTGCTTCCAAATGAAGCTGCAGTTTCTATTGGTGGTTTTAATAAATATGCTGTTAAACAAGAAAATGCTTCTGTTAGTGTGACGCTTTACGGTCTTGCTCAGTGTACGCCGGACTTGTCAGCTGGGGATTGTAGGCGGTGTATTGAGGACGCGGCCGCGGAGTTTCCTAAGGCTTGTTGTGGAGGTAGCATAGGGGAAACTATTTTGTTTCCAAGCTGTTTTGTTAGATATGAGACTTATCCGTTTTATTTGCATTCTGGAACATCGGCATCAATATCAACTTCGGATAAGGGGGGAAGAAATATTTCAACACATTTGATTGCCATCATAGTTGTCTTGGTTGTCATTTTGGTGGTGATTTTTTGCATTGGCTGCTATATCTTATGGATAAAAGCGAAGAAGAGACGCAAGGCTAGTCACAGAGAAAACCTTGGGCTTGAATTTCGTAACACTGAGTCCTTGGAATTTGATTTTGCTACAATTGAAATAGCAACAAACAATTTTTCTGATGATAGCAAAATAGGCAAAGGGGGATATGGACAAGTCTACAAGGGAACACTTCCTAATGGACAAGAAATAGCTGTGAAGAGACTGTCGAAAACTTCTGGCCAAGGAGCAGAAGAATTCAAAAATGAAGTGATGTTAATAGCCAAACTTCAACACAGAAATTTGGTGAGGTTAATAGGATTTTGCCTTGAAGATCAAGAAAAGATACTAATCTATGAATATGTGCCTAACAAAAGTCTTGATCACTTCCTATTTGATTCTCGGAAGCAAAAAGAATTAACTTGGCCTGAACGGTATAATATCATTAAAGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTCAAGATTATTCATCGCGATATTAAACCGAGCAATGTACTTCTAGATAACAACATGAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGATATAGAGCAAGTTCAAGGACACACAAATAGAGTTGTCGGAACATATGGTTACATGTCTCCAGAATATGCAATGCACGGACAATTTTCAGTGAAGTCTGATGTTTTCAGTTTTGGAGTTATGGTTCTCGAGATTCTTAGCGGAAAAAAGAATTCCTGTAGTTTTGAATCATGTCGTGTCGATGATCTCTTGAGTTATGCTTGGAATCAATGGCATGGTGAAACTCCATTTGAAATGCTGGATCCAATTATGCAAGAATCTTATACTCCAAATGAAGTAGAAAAATGTGTGCAAATTGGTTTATTGTGTGTCCAAGAAAATCCAGATGATAGGCCTACAATGGGAACTGTTGTTTCATATCTTACTAATGTCTCAGTTGATATGCCATTTCCAATGGAACCAGCATTTTTCATGCATGGCAGAACAAGAAGAAATTCAGGCAATTCAGCTGAACATGAATCATATTCAGACTTTACACTAAAAAAATATTGGAAAGAAATGATTGGATGGAGACAATCAGTCTAA	1983	0.3631	MMIIKLLSKIFTLITLILIVSITKTSASVFNNVTCTNNKTFIQNSTFDSNLKTLLSSLSSNVTNDVRFFNTTSGKGLDKVYGLYMCRGDVPFALCRECIGFATLTIPKSCPSSKEAVIWYNECLLRYSYRFIFSKMETLPRYKIEIPMGDPVLLQSKGFYAALRSVLNVLPNEAAVSIGGFNKYAVKQENASVSVTLYGLAQCTPDLSAGDCRRCIEDAAAEFPKACCGGSIGETILFPSCFVRYETYPFYLHSGTSASISTSDKGGRNISTHLIAIIVVLVVILVVIFCIGCYILWIKAKKRRKASHRENLGLEFRNTESLEFDFATIEIATNNFSDDSKIGKGGYGQVYKGTLPNGQEIAVKRLSKTSGQGAEEFKNEVMLIAKLQHRNLVRLIGFCLEDQEKILIYEYVPNKSLDHFLFDSRKQKELTWPERYNIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNNMNPKISDFGMARMVDIEQVQGHTNRVVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEILSGKKNSCSFESCRVDDLLSYAWNQWHGETPFEMLDPIMQESYTPNEVEKCVQIGLLCVQENPDDRPTMGTVVSYLTNVSVDMPFPMEPAFFMHGRTRRNSGNSAEHESYSDFTLKKYWKEMIGWRQSV	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g05683	660	SUPERFAMILY	Protein kinase-like (PK-like)	321	634	IPR011009	-
	Trre1g05683	660	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	28	132	-	-
	Trre1g05683	660	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Trre1g05683	660	FunFam	Cysteine-rich receptor-like protein kinase 10	298	411	-	-
	Trre1g05683	660	CDD	STKc_IRAK	342	609	-	-
	Trre1g05683	660	ProSiteProfiles	Protein kinase domain profile.	336	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05683	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Trre1g05683	660	Gene3D	Phosphorylase Kinase; domain 1	297	411	-	-
	Trre1g05683	660	SMART	serkin_6	336	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05683	660	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524
	Trre1g05683	660	Pfam	Salt stress response/antifungal	35	128	IPR002902	-
	Trre1g05683	660	Pfam	Salt stress response/antifungal	157	248	IPR002902	-
	Trre1g05683	660	Pfam	Protein tyrosine and serine/threonine kinase	340	607	IPR001245	GO:0004672\|GO:0006468
	Trre1g05683	660	Gene3D	Transferase(Phosphotransferase) domain 1	412	615	-	-
	Trre1g05683	660	Gene3D	-	28	131	IPR038408	-
	Trre1g05683	660	Gene3D	-	153	250	IPR038408	-
	Trre1g05683	660	FunFam	cysteine-rich receptor-like protein kinase 10	412	614	-	-
	Trre1g05683	660	ProSiteProfiles	Gnk2-homologous domain profile.	141	250	IPR002902	-
	Trre1g05683	660	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	22	636	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05683	Trre-Chr1	62030862	62035506	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g05683	10	642	Receptor kinase-like Gene Family	AT4G05200	43.313	0.0	556

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre1g05683		PK_Tyr_Ser-Thr	1.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05683	-		-	mtr:25485264	1090.49