Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05680 ATGGCCTCTTTCCACCCCGTCTTTCTCTTTATCCTTGTTTGCTTCATCAATTTCGTAACCACTAAAGCAAAGAATAATGATATTATCTCGATGACTTGCTCGAATATCAACAAAACCACTCCAAATAACGCTTTCCAATTGAATCTCAAGACCCTCCTCACAGATTTATCTTCAAACGCCACTGCTAACAAGGAATTCTACAACACTATAGTAGAAGGCAAAAACCATTCGACTGATACACTCTATGGTCAGTTTATGTGCAAGGGTGATGTTCCTGCTCATCTCTGTAGTCAGTGCGTCACAAACTTGACTCGTTATAATTTATCCTCAGACCCACTGAACTATGATTATTGTTCCTTGTCCAAAGAGGTGATAATCCAGTATGACGAATGCATGGTCCGATATTCCAACAAATCTTTCTTCTCCCCTACTCACTTTAGTTCACATTCTAGCGGGTGCTCATCTGTTAATGTGTCCAATCCGGCAGTATTCGAGCGTTTAGTTTTCAAAACCTTGAATGGTGTGGCAGATGAGGCAGCCAATTTTTCAATTGGCGTCAAGAAGTATGCCACAAAGGAAGCAACCATATCTGAATTTCAAAACCTATATTTTCAAGCTCAGTGCACACCAGACCTGTCACCACAAGATTGCAGGAAATGTCTGAATATTACCATAACGGACGTTCAGAACTGTAAAAATAGCAACGAAGTGGTAGGGGATTCTGAAACTTACAATTGTTACATCAGATATGATGTGTACCCTTTCTATCGCCCCAGTAATGCTCCCACACCACAAGATCTCGTTCCAGCATCCAATACAATTGATTCAAAATACTCACAGCATCCTGCTTATCTTTCCCACAATTGTTCAAACAATGAAACCATGAACAACAGTTTTCTATCAAATCTCAGAACACTCTTTTCTTCATTGTCTTCCAATGCCATCAGAACCAGTTTCTTCAAGACAACTGTCAACACGGTCAATGGCTTCTTCATGTGCCGCGGTGATATCTACCTCTCCCCTACCCTCTGTCAGTTATGTGTCCAAGATGCAATCAAAAGAATATCCTCGGAGTGTCCTACCTCCAAAGAGGCTATAATTTGGTATGACAAATGCTTACTCCGCTATTCCTATCATTCTCTCCTTTCAGGTATTGATACAAGTTCTCCAAAATTTCACCAATTCAATATGGCCAATGCTTCAAACCTGAACCTGCTTCAAAGCTTCGCTACTTGGATACTAGCAAATACTTTATATGGATTGCAGTATATCCAGACAGAGACAGGGGAGAGTACTATTAAAAACTATGAAACAAGATCGGTAAAATTGAATAATCATCAAACACTTTACACTCTTGTTCAATGTACGCCAGATTTGTCTGATGGAGATTGCAGCACCTGCCTGAAAAACATTTTCCAAAACGAAATTCCTTGGAGTAGTTTGGCAAGTCCAGAAGGAAAAATTTTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAGGAATGGTGATGAACCAGAAGAAAATGAAAAAAGAAGGTCGCGAATGGTGATAGTTGTTGTCCCGATCGTCCTGTCAACATTGCTTCTAACTTTTTCCTGCTATTTGCTAAGGAGAAAAGCAAGAAAGAGCAGTTATAAGACCTTAATTCTTAAAGAAAACTTTGGCCATGAAAGTACCACTTTGGAGGGTTTGCAATTCGAAATGGCCGTAATTAGAACAGCAACAGACAACTTTTCACATGAAAACAAGATTGGCGAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGTCATGTAGCTGTTAAGAGGCTTTCATCAAATCAAGATCAAGGACATACAAACAAAATTGCTGGAACATGGGGCTACATGTCCCCAGAGTATGCAATGCTTGGACAATTTTCAGAGAAATCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACAGGAAAAAGAAATATAAATCCTTATGAATCACATCATGTTACCGAAGGCCTCACAAGTTATGTATGGAGACAATGGAAAAATGAAACTCCATTAATCATATTGGATCCAAAGTTTGAAAATTATTCTCGTATTGAAGTTATTAAGTGTATACAGATTGGTTTGTTATGCGTTCAAGAAAATCCAAATGTCAGACCTACAATGGCAACGGTTGTTTCATATCTCAATAGTCATTCACCAGAATTGCCATCTCCACAAGAACCAGCATTTTTCATACAACATAGAATGAATGAAGAAGTAACAGCACAAATGGAACTAAGTTCTGCCAATAATTTTATATCATTATCAGTCAACCATATGTCTATAAGTGAATTTTATCCTCAAAGGTAG 2364 0.3849 MASFHPVFLFILVCFINFVTTKAKNNDIISMTCSNINKTTPNNAFQLNLKTLLTDLSSNATANKEFYNTIVEGKNHSTDTLYGQFMCKGDVPAHLCSQCVTNLTRYNLSSDPLNYDYCSLSKEVIIQYDECMVRYSNKSFFSPTHFSSHSSGCSSVNVSNPAVFERLVFKTLNGVADEAANFSIGVKKYATKEATISEFQNLYFQAQCTPDLSPQDCRKCLNITITDVQNCKNSNEVVGDSETYNCYIRYDVYPFYRPSNAPTPQDLVPASNTIDSKYSQHPAYLSHNCSNNETMNNSFLSNLRTLFSSLSSNAIRTSFFKTTVNTVNGFFMCRGDIYLSPTLCQLCVQDAIKRISSECPTSKEAIIWYDKCLLRYSYHSLLSGIDTSSPKFHQFNMANASNLNLLQSFATWILANTLYGLQYIQTETGESTIKNYETRSVKLNNHQTLYTLVQCTPDLSDGDCSTCLKNIFQNEIPWSSLASPEGKILYPSCYMMFGLSQFYRNGDEPEENEKRRSRMVIVVVPIVLSTLLLTFSCYLLRRKARKSSYKTLILKENFGHESTTLEGLQFEMAVIRTATDNFSHENKIGEGGFGEVYKGILSDGRHVAVKRLSSNQDQGHTNKIAGTWGYMSPEYAMLGQFSEKSDVFSFGVIVLEIITGKRNINPYESHHVTEGLTSYVWRQWKNETPLIILDPKFENYSRIEVIKCIQIGLLCVQENPNVRPTMATVVSYLNSHSPELPSPQEPAFFIQHRMNEEVTAQMELSSANNFISLSVNHMSISEFYPQR 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05680 787 ProSiteProfiles Gnk2-homologous domain profile. 27 140 IPR002902 -
Trre1g05680 787 Pfam Protein tyrosine and serine/threonine kinase 629 732 IPR001245 GO:0004672|GO:0006468
Trre1g05680 787 ProSiteProfiles Gnk2-homologous domain profile. 281 381 IPR002902 -
Trre1g05680 787 SUPERFAMILY Protein kinase-like (PK-like) 570 755 IPR011009 -
Trre1g05680 787 Pfam Salt stress response/antifungal 289 377 IPR002902 -
Trre1g05680 787 Pfam Salt stress response/antifungal 156 252 IPR002902 -
Trre1g05680 787 Pfam Salt stress response/antifungal 33 137 IPR002902 -
Trre1g05680 787 Pfam Salt stress response/antifungal 434 497 IPR002902 -
Trre1g05680 787 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Trre1g05680 787 ProSiteProfiles Protein kinase domain profile. 582 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05680 787 ProSiteProfiles Gnk2-homologous domain profile. 394 502 IPR002902 -
Trre1g05680 787 Gene3D - 394 502 IPR038408 -
Trre1g05680 787 Gene3D - 281 380 IPR038408 -
Trre1g05680 787 Gene3D - 146 255 IPR038408 -
Trre1g05680 787 Gene3D - 25 140 IPR038408 -
Trre1g05680 787 Gene3D Transferase(Phosphotransferase) domain 1 618 763 - -
Trre1g05680 787 Gene3D Transferase(Phosphotransferase) domain 1 568 617 - -
Trre1g05680 787 ProSiteProfiles Gnk2-homologous domain profile. 146 255 IPR002902 -
Trre1g05680 787 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 10 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05680 Trre-Chr1 62016509 62020885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05680 279 786 Receptor kinase-like Gene Family AT4G23280 30.606 4.53e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05680 PK_Tyr_Ser-Thr 5.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05680 - - gmx:100792696 641.343