Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05679 ATGGCCTCTTTCCACCCCGTCTTTCTCTTTATCCTTGTTTGCTTCATCAATTTCGTAACCACTAAAGCAAAGAATAATGATATTATCTCGATGACTTGCTCGAATATCAACAAAACCACTCCAAATAACGCTTTCCAATTGAATCTCAAGACCCTCCTCACAGATTTATCTTCAAACGCCACTGCTAACAAGGAATTCTACAACACTATAGTAGAAGGCAAAAACCATTCGACTGATACACTCTATGGTCAGTTTATGTGCAAGGGTGATGTTCCTGCTCATCTCTGTAGTCAGTGCGTCACAAACTTGACTCGTTATAATTTATCCTCAGACCCACTGAACTATGATTATTGTTCCTTGTCCAAAGAGGTGATAATCCAGTATGACGAATGCATGGTCCGATATTCCAACAAATCTTTCTTCTCCCCTACTCACTTTAGTTCACATTCTAGCGGGTGCTCATCTGTTAATGTGTCCAATCCGGCAGTATTCGAGCGTTTAGTTTTCAAAACCTTGAATGGTGTGGCAGATGAGGCAGCCAATTTTTCAATTGGCGTCAAGAAGTATGCCACAAAGGAAGCAACCATATCTGAATTTCAAAACCTATATTTTCAAGCTCAGTGCACACCAGACCTGTCACCACAAGATTGCAGGAAATGTCTGAATATTACCATAACGGACGTTCAGAACTGTAAAAATAGCAACGAAGTGGTAGGGGATTCTGAAACTTACAATTGTTACATCAGATATGATGTGTACCCTTTCTATCGCCCCAGTAATGCTCCCACACCACAAGATCTCGTTCCAGCATCCAATACAATTGATTCAAAATACTCACAGCATCCTGCTTATCTTTCCCACAATTGTTCAAACAATGAAACCATGAACAACAGTTTTCTATCAAATCTCAGAACACTCTTTTCTTCATTGTCTTCCAATGCCATCAGAACCAGTTTCTTCAAGACAACTGTCAACACGGTCAATGGCTTCTTCATGTGCCGCGGTGATATCTACCTCTCCCCTACCCTCTGTCAGTTATGTGTCCAAGATGCAATCAAAAGAATATCCTCGGAGTGTCCTACCTCCAAAGAGGCTATAATTTGGTATGACAAATGCTTACTCCGCTATTCCTATCATTCTCTCCTTTCAGGTATTGATACAAGTTCTCCAAAATTTCACCAATTCAATATGGCCAATGCTTCAAACCTGAACCTGCTTCAAAGCTTCGCTACTTGGATACTAGCAAATACTTTATATGGATTGCAGTATATCCAGACAGAGACAGGGGAGAGTACTATTAAAAACTATGAAACAAGATCGGTAAAATTGAATAATCATCAAACACTTTACACTCTTGTTCAATGTACGCCAGATTTGTCTGATGGAGATTGCAGCACCTGCCTGAAAAACATTTTCCAAAACGAAATTCCTTGGAGTAGTTTGGCAAGTCCAGAAGGAAAAATTTTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAGGAATGGTGATGAACCAGAAGGCATTTTTTTTACGATTTGTGCAGAAAATGAAAAAAGAAGGTCGCGAATGGTGATAGTTGTTGTCCCGATCGTCCTGTCAACATTGCTTCTAACTTTTTCCTGCTATTTGCTAAGGAGAAAAGCAAGAAAGAGCAGTTATAAGACCTTAATTCTTAAAGAAAACTTTGGCCATGAAAGTACCACTTTGGAGGGTTTGCAATTCGAAATGGCCGTAATTAGAACAGCAACAGACAACTTTTCACATGAAAACAAGATTGGCGAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGTCATGTAGCTGTTAAGAGGCTTTCATCAAGTTCAAAGCAAGGCATCGTCGAGTTCAAGAATGAAATTTTATTGATAGCCAAGTTACAGCAAAGAAATCTTGTGGTATTAATAGGTTTCTGCATAGAAGAGCAAGAGAAGATTCTTATCTATGAATATGTGCCAAATGGGAGCCTTGATTACTTTTTATTTGATACTCAACAACAGAAGTTAACCTGGGACGAACGTTACAAAATTATAGGAGGGACGGCGTTAGGAATTCTTTATTTACATGAATATTCTCGTCTCAAAGTTATACATCGTGATCTTAAACCTAGTAATGTTTTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGTATGGCTAGAATTGTTCAAATAGATCAAGATCAAGGACATACAAACAAAATTGCTGGAACATGGGGCTACATGTCCCCAGAGTATGCAATGCTTGGACAATTTTCAGAGAAATCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACAGGAAAAAGAAATATAAATCCTTATGAATCACATCATGTTACCGAAGGCCTCACAAGTTATGTATGGAGACAATGGAAAAATGAAACTCCATTAATCATATTGGATCCAAAGTTTGAAAATTATTCTCGTATTGAAGTTATTAAGTGTATACAGATTGGTTTGTTATGCGTTCAAGAAAATCCAAATGTCAGACCTACAATGGCAACGGTTGTTTCATATCTCAATAGTCATTCACCAGAATTGCCATCTCCACAAGAACCAGCATTTTTCATACAACATAGAATGAATGAAGAAGTAACAGCACAAATGGAACTAAGTTCTGCCAATAATTTTATATCATTATCAGTCAACCATATGTCTATAAGTGAATTTTATCCTCAAAGGTAG 2745 0.3774 MASFHPVFLFILVCFINFVTTKAKNNDIISMTCSNINKTTPNNAFQLNLKTLLTDLSSNATANKEFYNTIVEGKNHSTDTLYGQFMCKGDVPAHLCSQCVTNLTRYNLSSDPLNYDYCSLSKEVIIQYDECMVRYSNKSFFSPTHFSSHSSGCSSVNVSNPAVFERLVFKTLNGVADEAANFSIGVKKYATKEATISEFQNLYFQAQCTPDLSPQDCRKCLNITITDVQNCKNSNEVVGDSETYNCYIRYDVYPFYRPSNAPTPQDLVPASNTIDSKYSQHPAYLSHNCSNNETMNNSFLSNLRTLFSSLSSNAIRTSFFKTTVNTVNGFFMCRGDIYLSPTLCQLCVQDAIKRISSECPTSKEAIIWYDKCLLRYSYHSLLSGIDTSSPKFHQFNMANASNLNLLQSFATWILANTLYGLQYIQTETGESTIKNYETRSVKLNNHQTLYTLVQCTPDLSDGDCSTCLKNIFQNEIPWSSLASPEGKILYPSCYMMFGLSQFYRNGDEPEGIFFTICAENEKRRSRMVIVVVPIVLSTLLLTFSCYLLRRKARKSSYKTLILKENFGHESTTLEGLQFEMAVIRTATDNFSHENKIGEGGFGEVYKGILSDGRHVAVKRLSSSSKQGIVEFKNEILLIAKLQQRNLVVLIGFCIEEQEKILIYEYVPNGSLDYFLFDTQQQKLTWDERYKIIGGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDQGHTNKIAGTWGYMSPEYAMLGQFSEKSDVFSFGVIVLEIITGKRNINPYESHHVTEGLTSYVWRQWKNETPLIILDPKFENYSRIEVIKCIQIGLLCVQENPNVRPTMATVVSYLNSHSPELPSPQEPAFFIQHRMNEEVTAQMELSSANNFISLSVNHMSISEFYPQR 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05679 914 Pfam Salt stress response/antifungal 33 137 IPR002902 -
Trre1g05679 914 Pfam Salt stress response/antifungal 156 252 IPR002902 -
Trre1g05679 914 Pfam Salt stress response/antifungal 434 497 IPR002902 -
Trre1g05679 914 Pfam Salt stress response/antifungal 289 377 IPR002902 -
Trre1g05679 914 FunFam cysteine-rich receptor-like protein kinase 10 666 867 - -
Trre1g05679 914 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 265 909 - -
Trre1g05679 914 SMART serkin_6 590 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05679 914 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Trre1g05679 914 Gene3D Phosphorylase Kinase; domain 1 551 665 - -
Trre1g05679 914 ProSitePatterns Protein kinases ATP-binding region signature. 596 618 IPR017441 GO:0005524
Trre1g05679 914 Gene3D - 394 502 IPR038408 -
Trre1g05679 914 Gene3D - 25 140 IPR038408 -
Trre1g05679 914 Gene3D - 146 255 IPR038408 -
Trre1g05679 914 Gene3D - 281 380 IPR038408 -
Trre1g05679 914 ProSiteProfiles Gnk2-homologous domain profile. 281 381 IPR002902 -
Trre1g05679 914 Gene3D Transferase(Phosphotransferase) domain 1 666 871 - -
Trre1g05679 914 ProSiteProfiles Protein kinase domain profile. 590 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05679 914 ProSiteProfiles Gnk2-homologous domain profile. 146 255 IPR002902 -
Trre1g05679 914 ProSiteProfiles Gnk2-homologous domain profile. 27 140 IPR002902 -
Trre1g05679 914 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 549 665 - -
Trre1g05679 914 SUPERFAMILY Protein kinase-like (PK-like) 575 888 IPR011009 -
Trre1g05679 914 Pfam Protein tyrosine and serine/threonine kinase 593 859 IPR001245 GO:0004672|GO:0006468
Trre1g05679 914 CDD STKc_IRAK 596 861 - -
Trre1g05679 914 ProSiteProfiles Gnk2-homologous domain profile. 394 502 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05679 Trre-Chr1 62016509 62020885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05679 279 913 Receptor kinase-like Gene Family AT4G05200 42.665 2.35e-162 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05679 PK_Tyr_Ser-Thr 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05679 - - gmx:100785282 1060.06