Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05678 ATGTCCTCTTTTCACCGTGTCTTTCACTTTATCCTTGTTTGCTTCATCAATTTCGTAACCACTAAAACAAAAAATGATAATATTCACTCGATGTCTTGCTTAAATATCAAGGAAACAACTCCAAATAACGCCTTACAATTGAATCTCAAGACCCTCCTCGCAGATTTATCTTCAAACGCCACTCCTAACAAAGAATTCTACAGCACTACAATAGCAGTCAAAAACCACTCCTCTGATACAGTCTATGGGATGTTTATGTGCAAGGGTGATGTTCCTGCTCATCTCTGTAGTCAGTGCGTCACAAACTTGACTCGTTACGATGTATCCTCACACCGATTGAACTATGGTTGTTCCTGGTCCGATGGGATGATGATTCAGTCCAAGGAGTGCATGGTCCGATATTCCAACAATTATTTCTTCTCCCCTACTCACTTTAGCTCACGTTATAGTGCATGCTCCGCTGTTGATGTTTCCAACCAGGCAGCATTCCAGTGTTTAGTTTTCAAAACCTTGAATGGTGTGGCAGATGCGGCAGCCAATTTTCCAATTGGGGTCAAAAAGTATGCCACAAAGGAAGCAACCGTATCTGAATTTCAAACCCTTTATTTTCAAGCTCAGTGCACACCAGACCTGTCACCACAAGATTGCAGGAAATGTCTGGATGTTACCATAATGGACATTCTTCAGAACTGTAGAATTAACAACGCAGTGGTAGCGAACTCTGAAACTTACAATTGTAACATCAGATATGATGTGTACCCTTTCTATCGCCCCAGTAATGCTCCCACACCACAAGATCTCATTCCAGCTTCCGATAAAATTGATTCAAAATACTCACAGCATCCTGCTTATCTTTCCCACAATTGTTCAAACAATGAAACCATGAACAACAATTTTCAATCAAATCTCAGAACACTCTTCTCTTCATTGTCTTCCAATGCCATCAGAACCGGTTTCTTCAAGACAACTGTCAACACGGTCAATGGCCTCTTCATGTGCCGCGGTGATATCTCCCTCTCCCCTACCCTCTGTCAGTTATGTGTCCAAGATGCAACCAAAAGAATATCCTCAGAGTGTCCTACCTCCAAAGAGGCTATAATTTGGTATGATAAATGCTTACTCCGCTATTCCTATCACTCTCTCCTTTCAGGTATTGATACAAGTGCTCCAAAATTTCACCAATTCAATATGGCCAATGCTTCTAACGTGAACCTGCTTCAAAGCTTCGCCACTTGGATACTAGCAAATAATTTATATGAGTTGAAGTATATCCAGACCAGCAAGAGTACTATTAAAAACTATGCAACAAGATTGGTAAAATTGAATAATCATCAAACCCTTTACACTCTTGTTCAATGCACGCCAGATTTGTCTGATGGAGATTGCGACACCTGCCTGACAAACATTTTCCAAAACGAAATTCCTTGGAGTAGTTTGGCAAGTCCAGAAGGAAAAATTCTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAGCAATGGCGATGAACCGGAGGGAATTGGGCAAGTTAGTCCTCCTCCAACAACTAAAGATGATGAAAAAAGAAAGTCGCAAATGATGATAGTTTCTGTTCCGATCATCCTTTCAACATTGCTTCTAACTTTTTCCTACTATCTGCTAACGAAAAGGGCAAGGAAGAGCAGCTATAAGGCCTTAATTCTAAAAGAAAATTTTGGTCATGAAAGTACAGCTTTGGAGGGTTTGCAATTCGAAATGGCCGTAATTAGAACAGCAACAGACAACTTTTCACACGAAAACAAAATTGGTGAAGGTGGATTTGGAGAAGTTTACAAGGGCGTTCTTTCTGATGGACGACAAATTGCTGTTAAGAGGCTTTCATCAAGTTCAAAGCAAGGCATTGACGAGTTCAAGAATGAAATTTTATTGATAGCCAAGTTACAACAAAGAAATCTGGTGGCATTAATAGGTTTTTGCCTAGAAGAGCAAGAGAAGATTCTTATTTATGAATATGTGCCAAATGGGAGCCTTGATTACTTATTATTTGACACTCGACAACAAAATTTAAGCTGGGATGAACGTTACAAAATTATACGTGGAACAGCTGCAGGAGTTCTATATTTGCATGAATATTCTCGTCTCAAAGTTATACATCGTGATCTGAAACCTAGTAATGTTCTATTAGATGAAAATATGAATCCTAAAATATCTGATTTTGGTATGGCGAGAATTGTTCAAATAGATCAAGATCGTGGACAAACCAACAAAATTGCTGGAACATGGGGTTACATGTCCCCGGAGTATGCAATGCTTGGACAATTTTCGGAGAAGTCAGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACTGGAAAAAGAAATATAAATCCTTATGAATCACTTCATGTTACTGAAGGCCTCACAAGTTATGTGTGGAAACAATGGAAAAATGAAACTCCATTAATCATATTGGATCCAAAAATTGAAAATTATTCTCATATGGAAGTTATTAAGTGCATACAGATAGGTTTGTTATGTGTTCAAGAAAATCCAAATGTCAGGCCTACTATGGCAATGGCTGTTTCATATCTTAAGAGTTGTTCACCAGAATTGCCATCTCCACAAGAACCAGCATTTTTCATACAAGACAGAATGAATCAAGAAGTAACAGCACACATGGAATCAAGTTCTACCAATAACTTTATATCATTTTCTGTCAACGATATGTCTATAAGTGAATTTTATCCTCGGCGATAG 2751 0.3857 MSSFHRVFHFILVCFINFVTTKTKNDNIHSMSCLNIKETTPNNALQLNLKTLLADLSSNATPNKEFYSTTIAVKNHSSDTVYGMFMCKGDVPAHLCSQCVTNLTRYDVSSHRLNYGCSWSDGMMIQSKECMVRYSNNYFFSPTHFSSRYSACSAVDVSNQAAFQCLVFKTLNGVADAAANFPIGVKKYATKEATVSEFQTLYFQAQCTPDLSPQDCRKCLDVTIMDILQNCRINNAVVANSETYNCNIRYDVYPFYRPSNAPTPQDLIPASDKIDSKYSQHPAYLSHNCSNNETMNNNFQSNLRTLFSSLSSNAIRTGFFKTTVNTVNGLFMCRGDISLSPTLCQLCVQDATKRISSECPTSKEAIIWYDKCLLRYSYHSLLSGIDTSAPKFHQFNMANASNVNLLQSFATWILANNLYELKYIQTSKSTIKNYATRLVKLNNHQTLYTLVQCTPDLSDGDCDTCLTNIFQNEIPWSSLASPEGKILYPSCYMMFGLSQFYSNGDEPEGIGQVSPPPTTKDDEKRKSQMMIVSVPIILSTLLLTFSYYLLTKRARKSSYKALILKENFGHESTALEGLQFEMAVIRTATDNFSHENKIGEGGFGEVYKGVLSDGRQIAVKRLSSSSKQGIDEFKNEILLIAKLQQRNLVALIGFCLEEQEKILIYEYVPNGSLDYLLFDTRQQNLSWDERYKIIRGTAAGVLYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDRGQTNKIAGTWGYMSPEYAMLGQFSEKSDVFSFGVIVLEIITGKRNINPYESLHVTEGLTSYVWKQWKNETPLIILDPKIENYSHMEVIKCIQIGLLCVQENPNVRPTMAMAVSYLKSCSPELPSPQEPAFFIQDRMNQEVTAHMESSSTNNFISFSVNDMSISEFYPRR 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05678 916 ProSiteProfiles Protein kinase domain profile. 592 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05678 916 CDD STKc_IRAK 598 863 - -
Trre1g05678 916 SUPERFAMILY Protein kinase-like (PK-like) 578 893 IPR011009 -
Trre1g05678 916 ProSiteProfiles Gnk2-homologous domain profile. 281 381 IPR002902 -
Trre1g05678 916 ProSiteProfiles Gnk2-homologous domain profile. 27 139 IPR002902 -
Trre1g05678 916 FunFam cysteine-rich receptor-like protein kinase 10 668 869 - -
Trre1g05678 916 SMART serkin_6 592 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05678 916 Gene3D Transferase(Phosphotransferase) domain 1 668 874 - -
Trre1g05678 916 Pfam Salt stress response/antifungal 426 495 IPR002902 -
Trre1g05678 916 Pfam Salt stress response/antifungal 158 252 IPR002902 -
Trre1g05678 916 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Trre1g05678 916 Pfam Salt stress response/antifungal 289 377 IPR002902 -
Trre1g05678 916 ProSiteProfiles Gnk2-homologous domain profile. 391 500 IPR002902 -
Trre1g05678 916 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 288 911 - -
Trre1g05678 916 ProSiteProfiles Gnk2-homologous domain profile. 145 255 IPR002902 -
Trre1g05678 916 Gene3D Phosphorylase Kinase; domain 1 553 667 - -
Trre1g05678 916 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 553 667 - -
Trre1g05678 916 Pfam Protein kinase domain 593 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05678 916 MobiDBLite consensus disorder prediction 506 525 - -
Trre1g05678 916 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524
Trre1g05678 916 Gene3D - 282 380 IPR038408 -
Trre1g05678 916 Gene3D - 26 139 IPR038408 -
Trre1g05678 916 Gene3D - 145 255 IPR038408 -
Trre1g05678 916 Gene3D - 392 500 IPR038408 -
Trre1g05678 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05678 Trre-Chr1 62008607 62013025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05678 279 915 Receptor kinase-like Gene Family AT4G05200 41.892 5.78e-160 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05678 Pkinase 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05678 - - gmx:100785282 1045.42