LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05676	ATGGGTTCCTTCCATTTTCTGATTTTACTTCCAACTTTATTTTCCTTCGTTGTTCATTGTTCTTCTTATCCCATCATAGAAGCTGCAAGTGATCCATCTACGCATTCTTACTATAACTGCACAAGGAACAGCACTTCTGCAACCGATAAGGCTTACCGTTCCAACGTTAAAATACTCCTGGATTGGCTCTCCACCAATAGCAGTAACAATGGAAGATACTACAATACCACAGTTGCTAGCCAACACACCATGGACACTGTCTATGGTCTCTTCTTTTGTGTTAGCGACATTGACCTCAAAATGTGTAACTTGTGTGTAATAGAAGCAGCCAAACTCATATCATCATTGTGCACGACAGAAAAAGAAGCAATAATTTGGTACCAAGTATGCTATGTGCACTATTCAGATCGTCGCTTCTTTTCCACCGTGGAGATAAGTCCTGAACTTTCTTTCATGAACGATAAGGATTATGTGGGTGACGTTGGGCGCTTCAACAACATTCTGTGGGATATGTTGAATGATTTGAGAAGAGAGACGGGAAATACTTCTGCTAAATTGGCCAACAAGTCAGTGAACCTCACAGAAAACCAAAAACTATATGGCTATGCTTGGTGCCTCCCATACCTATCTGCAGAGAATTGCAGCTGGTGTCTAAGTGATGCCATAGCAGGAGTTCCAACCAGCTGCTGCAGAGGAAAATCTGGAGGCACAATATTATACCCTAGTTGTGGTGTTAGATTCGAATTATATCCATTCCACAAAGCACACAGCAATATTACTTGGGTGCTGCCTCCAGCCACAAGTTCCAGCTCTTCAGCTCCACCAGGAAAAGGAAAACAGAAGACACTGACAATATTTGAGATCGTTGTTCCAATTGTTGTCTCACTGGTGTTTATAGTCTTGGGATGCTGTTTCTTTCTATATAGAAAAGAAACAAAGAATCAGCATGATATTCTCAAAGAAAGCTTTGGGAATGACAGTACCACTTTGGAGTCCTTGCAATTTGAATTTTCCAAAATTGAAGCAGCAACAAACAGATTTGCTGCAGAAAACAGGATAGGCAGAGGTGGATTTGGAGAAGTCTACATGGGAATTCTTTCAGATGGACAAGAAATTGCTGTGAAGAGGCTTACAAGAAGCTCTGGACAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCCAAGCTTCAACACAGAAATCTAGTGAGATTACTAGGATTTTGTTTGGAAGATGAAGAGAAGATACTTATCTATGAGTATGTGCCAAACAAGAGTCTTGATTACTTTTTATTTGATCCCCAGAAGCGAAAACTATTATCTTGGTCTCAACGTCAGAATATCATCAAAGGAATTGCTCGTGGAATTCTTTATCTCCATGAAGATTCTCGTCTCAAAATAATACACCGTGATCTGAAACCTAGCAATGTGTTGTTAGATAGTAATATGAATCCAAAAATATCAGATTTTGGCATGGCTAGGATTGTATCAATAGATCAAATTGAAGAAAGTACATGCACGATTGTAGGGACATATGGTTATATATCTCCGGAATATGCAATGCACGGATACTTTTCTGTAAAATCAGATGTGTATAGTTTCGGAATCGTGGTTCTAGAGACTATTAGTGGAAAGAGGAAAGGTTGTTCTGCTGAATTAGAGCGTGTTGATGATATCCGGAGATATGCATGGACAAAATGGGCAGAGCAAACACCACTTGAACTAATGGATCCTAATATAGAAGGAAGTTATTCACAAGAAGAAGTCATCAAGTACATCCACATTGGTTTGTTATGTGTTCAGGAAAATCCAGATGACAGACCTACAATGGCAACAATTGCATTCTACCTCAACAGCCCTTCAATCAACTTGCCATCCCCTCTTGAACCACCGTATTTTAAGCGTAGTGGAATTGAAGAAAACATGGTCTTCAACAATGCATTGGATAGTAATAGTACCAGTGACTCAATCAACGGACTCTCTATTACTAAGTTCTTTCCTCGTTAA	2010	0.3955	MGSFHFLILLPTLFSFVVHCSSYPIIEAASDPSTHSYYNCTRNSTSATDKAYRSNVKILLDWLSTNSSNNGRYYNTTVASQHTMDTVYGLFFCVSDIDLKMCNLCVIEAAKLISSLCTTEKEAIIWYQVCYVHYSDRRFFSTVEISPELSFMNDKDYVGDVGRFNNILWDMLNDLRRETGNTSAKLANKSVNLTENQKLYGYAWCLPYLSAENCSWCLSDAIAGVPTSCCRGKSGGTILYPSCGVRFELYPFHKAHSNITWVLPPATSSSSSAPPGKGKQKTLTIFEIVVPIVVSLVFIVLGCCFFLYRKETKNQHDILKESFGNDSTTLESLQFEFSKIEAATNRFAAENRIGRGGFGEVYMGILSDGQEIAVKRLTRSSGQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDEEKILIYEYVPNKSLDYFLFDPQKRKLLSWSQRQNIIKGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVSIDQIEESTCTIVGTYGYISPEYAMHGYFSVKSDVYSFGIVVLETISGKRKGCSAELERVDDIRRYAWTKWAEQTPLELMDPNIEGSYSQEEVIKYIHIGLLCVQENPDDRPTMATIAFYLNSPSINLPSPLEPPYFKRSGIEENMVFNNALDSNSTSDSINGLSITKFFPR	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g05676	669	Gene3D	Transferase(Phosphotransferase) domain 1	423	624	-	-
	Trre1g05676	669	Pfam	Protein kinase domain	349	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05676	669	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	102	665	-	-
	Trre1g05676	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	468	480	IPR008271	GO:0004672\|GO:0006468
	Trre1g05676	669	Pfam	Salt stress response/antifungal	40	136	IPR002902	-
	Trre1g05676	669	Pfam	Salt stress response/antifungal	161	250	IPR002902	-
	Trre1g05676	669	CDD	STKc_IRAK	353	619	-	-
	Trre1g05676	669	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	308	422	-	-
	Trre1g05676	669	ProSiteProfiles	Gnk2-homologous domain profile.	145	252	IPR002902	-
	Trre1g05676	669	SMART	serkin_6	347	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05676	669	FunFam	cysteine-rich receptor-like protein kinase 10	423	625	-	-
	Trre1g05676	669	ProSitePatterns	Protein kinases ATP-binding region signature.	353	375	IPR017441	GO:0005524
	Trre1g05676	669	ProSiteProfiles	Gnk2-homologous domain profile.	34	139	IPR002902	-
	Trre1g05676	669	SUPERFAMILY	Protein kinase-like (PK-like)	330	636	IPR011009	-
	Trre1g05676	669	Gene3D	Phosphorylase Kinase; domain 1	308	422	-	-
	Trre1g05676	669	ProSiteProfiles	Protein kinase domain profile.	347	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05676	669	Gene3D	-	149	252	IPR038408	-
	Trre1g05676	669	Gene3D	-	33	139	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05676	Trre-Chr1	61996352	62002289	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g05676	30	669	Receptor kinase-like Gene Family	AT4G05200	44.190	0.0	546

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre1g05676		Pkinase	4.9e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05676	-		-	gmx:100793219	995.727