Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05675 ATGTCAAAAGAAGCCACAATATATGCTGCTTATTGCATGGTTCGTTATTCCAATCGTTATTTCTTTGCTACAGTGGAAGAGAGTCCTAAACTAAGCTTCATGAACAAACACAACTATGTGGGGCCACAGTTTGGTCGGTTCAACGCAATACTTTTGAATACTATGAATGATATCAGAAATTCAACATCAAATGTTCCTAATGGATCTTTGAAATTGAAGAATGCGTATAAATCAGTTAACATCACAGATAACCAAACGCTGTATGCAATGGGAAATTGCATTCCATACCTTTCTTCATATGACTGTAGTTGGTGTCTCGGTGATGCCATAGCAGAAATTCGAACATCTTGTTGTAAAGGAAAAACTGGAGGCAGAATTTACTTCCCTAGTTGCTCAATAAGATTCGAACTTTATCCATTTTACGATACACTAGCTTCGACGACGATCCAGCCACCGCCACTATCTACTTCAACGGTTCCTCTTAGCACCTTGGCATCACCAGGAGAAAAAAGGACAAAGTCAATTATATTAGTGCTAGTTGTGGTTTTCCCGGTTGTTGTGACAGTGGTGCTTTTATGTTTGGGTTGCAGCTGTTTTATAAGAAGGAAACAAAGAAAGAATCAAGACAAAGAAAGCTGTAATAAGTTAAATCAATATAAAAAAGGTGTTTCTGATAAAAACAGAAACTCAAATCTATTTGGTGCAGTTGGGGATGATGTTGCTATTTTGGAATCCTTGAGGTTTGGTTTAGGTGAAATTGAATCTGCAACAAACAAGTTTGCTAAAGAAAATATGATTGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGTGTACTTTCCAACGGGGAAGAGGTCGCTGTGAAGAGGCTTTCGGGAAGCTCTAAGCAAGGTGCAAGAGAATTTAAGAATGAGGTTCTTGTTATAGCTCGACTTCAGCACAAAAATCTAGTGAAATTACAAGGATTTTGTCTTGATGAACAGGAAAAGATACTAATATACGAATATGTACCTAACAAGAGTCTTGATTACTTTTTATTTGATCCCCTAAAGAGAAGACAATTAGATTGGCATGAAAGGCACAAGATTATTGGAGGAATTGCTAGAGGAATTCTTTATCTTCACGAGGATTCACGCCTTAAAATTATACACCGTGATCTAAAACCTAGTAATATTTTGCTAGACAGTAGCATGAATCCAAAAATCTCAGATTTCGGTATGGCAAGAATTGTTGTGACCGATAATATTGAAGAAAATACACACAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGCCAATTCTCAGTGAAATCTGATGTGTTTAGTTTTGGAGTAATGGTATTGGAGATTATCAGTGGAAAAAGGAAATATTCTTCCTCTGAATCAGATTGTGTTGATATACGGAAATATGCTTGGACAAAATGGAAAAACCAAACAACACTGGAACTATTGGATCCTCAGATGGAAGGATCTTTGTCTCAAAATGATATAATAAGATGCATCCATATCGCATTATTATGTGTACAGGAAGACCCTAATGATAGACCCACAATGGCAAAAGTTGTTTCCTTCCTCAACAATCCTTCAGTGGATTTGCCATTACTTACGGAACAGTCATTTTTCATGAAAAGAACAATGGAGGACAATATGGTCAGAAAGGGATTGGACTCTATGGATAATTCAAACTGTGAATTGACAGTGAGTGAAATTTACCCTCGATAG 1737 0.3696 MSKEATIYAAYCMVRYSNRYFFATVEESPKLSFMNKHNYVGPQFGRFNAILLNTMNDIRNSTSNVPNGSLKLKNAYKSVNITDNQTLYAMGNCIPYLSSYDCSWCLGDAIAEIRTSCCKGKTGGRIYFPSCSIRFELYPFYDTLASTTIQPPPLSTSTVPLSTLASPGEKRTKSIILVLVVVFPVVVTVVLLCLGCSCFIRRKQRKNQDKESCNKLNQYKKGVSDKNRNSNLFGAVGDDVAILESLRFGLGEIESATNKFAKENMIGKGGFGEVYKGVLSNGEEVAVKRLSGSSKQGAREFKNEVLVIARLQHKNLVKLQGFCLDEQEKILIYEYVPNKSLDYFLFDPLKRRQLDWHERHKIIGGIARGILYLHEDSRLKIIHRDLKPSNILLDSSMNPKISDFGMARIVVTDNIEENTHRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKYSSSESDCVDIRKYAWTKWKNQTTLELLDPQMEGSLSQNDIIRCIHIALLCVQEDPNDRPTMAKVVSFLNNPSVDLPLLTEQSFFMKRTMEDNMVRKGLDSMDNSNCELTVSEIYPR 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05675 578 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 56 567 - -
Trre1g05675 578 ProSiteProfiles Gnk2-homologous domain profile. 27 140 IPR002902 -
Trre1g05675 578 Pfam Protein kinase domain 261 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05675 578 Gene3D Transferase(Phosphotransferase) domain 1 336 537 - -
Trre1g05675 578 ProSitePatterns Protein kinases ATP-binding region signature. 266 288 IPR017441 GO:0005524
Trre1g05675 578 FunFam cysteine-rich receptor-like protein kinase 10 336 537 - -
Trre1g05675 578 SMART serkin_6 260 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05675 578 Pfam Salt stress response/antifungal 42 138 IPR002902 -
Trre1g05675 578 CDD STKc_IRAK 266 532 - -
Trre1g05675 578 Gene3D Phosphorylase Kinase; domain 1 225 335 - -
Trre1g05675 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Trre1g05675 578 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 221 335 - -
Trre1g05675 578 SUPERFAMILY Protein kinase-like (PK-like) 246 550 IPR011009 -
Trre1g05675 578 Gene3D - 30 140 IPR038408 -
Trre1g05675 578 ProSiteProfiles Protein kinase domain profile. 260 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05675 Trre-Chr1 61990553 61993336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05675 3 578 Receptor kinase-like Gene Family AT4G05200 47.789 1.49e-173 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05675 Pkinase 2.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05675 - - tpra:123882552 1003.43