LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05674	ATGCATTACTCCCTGCTGCTCCCAATTCTCATCATAACCCTCACATTATTCTTCAACCATCACCACACCACAGTTTCTGCAAAATATTATTACCCGCCAAGTTACTATAACTGTTCAACCAACAACAACTACTCACCAAACAGCACATACCATATCAACCTTAAAACTCTTTTGTCATGGCTTTCATCCAATTCAACACCTACTACTCAAATATACAACACCACCATTACAGAATCTAACACCAACAACACTATCTATGGCCTCTTCACGTGCGAAATTGGAGACACCTATCCTAGCTGTAAACAGTGCGTTACAAACGCAACCAAACATATAGCAGAACTTTGTCCAATGTCAAAAGAAGCCACAATATATGCTGCTTATTGCATGGTTCGTTATTCCAATCGTTATTTCTTTGCTACAGTGGAAGAGAGTCCTAAACTAAGCTTCATGAACAAACACAACTATGTGGGGCCACAGTTTGGTCGGTTCAACGCAATACTTTTGAATACTATGAATGATATCAGAAATTCAACATCAAATGTTCCTAATGGATCTTTGAAATTGAAGAATGCGTATAAATCAGTTAACATCACAGATAACCAAACGCTGTATGCAATGGGAAATTGCATTCCATACCTTTCTTCATATGACTGTAGTTGGTGTCTCGGTGATGCCATAGCAGAAATTCGAACATCTTGTTGTAAAGGAAAAACTGGAGGCAGAATTTACTTCCCTAGTTGCTCAATAAGATTCGAACTTTATCCATTTTACGATACACTAGCTTCGACGACGATCCAGCCACCGCCACTATCTACTTCAACGGTTCCTCTTAGCACCTTGGCATCACCAGGAGAAAAAAGGACAAAGTCAATTATATTAGTGCTAGTTGTGGTTTTCCCGGTTGTTGTGACAGTGGTGCTTTTATGTTTGGGTTGCAGCTGTTTTATAAGAAGGAAACAAAGAAAGAATCAAGACAAAGAAAGCTTTGGGGATGATGTTGCTATTTTGGAATCCTTGAGGTTTGGTTTAGGTGAAATTGAATCTGCAACAAACAAGTTTGCTAAAGAAAATATGATTGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGTGTACTTTCCAACGGGGAAGAGGTCGCTGTGAAGAGGCTTTCGGGAAGCTCTAAGCAAGGTGCAAGAGAATTTAAGAATGAGGTTCTTGTTATAGCTCGACTTCAGCACAAAAATCTAGTGAAATTACAAGGATTTTGTCTTGATGAACAGGAAAAGATACTAATATACGAATATGTACCTAACAAGAGTCTTGATTACTTTTTATTTGATCCCCTAAAGAGAAGACAATTAGATTGGCATGAAAGGCACAAGATTATTGGAGGAATTGCTAGAGGAATTCTTTATCTTCACGAGGATTCACGCCTTAAAATTATACACCGTGATCTAAAACCTAGTAATATTTTGCTAGACAGTAGCATGAATCCAAAAATCTCAGATTTCGGTATGGCAAGAATTGTTGTGACCGATAATATTGAAGAAAATACACACAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGCCAATTCTCAGTGAAATCTGATGTGTTTAGTTTTGGAGTAATGGTATTGGAGATTATCAGTGGAAAAAGGAAATATTCTTCCTCTGAATCAGATTGTGTTGATATACGGAAATATGCTTGGACAAAATGGAAAAACCAAACAACACTGGAACTATTGGATCCTCAGATGGAAGGATCTTTGTCTCAAAATGATATAATAAGATGCATCCATATCGCATTATTATGTGTACAGGAAGACCCTAATGATAGACCCACAATGGCAAAAGTTGTTTCCTTCCTCAACAATCCTTCAGTGGATTTGCCATTACTTACGGAACAGTCATTTTTCATGAAAAGAACAATGGAGGACAATATGGTCAGAAAGGGATTGGACTCTATGGATAATTCAAACTGTGAATTGACAGTGAGTGAAATTTACCCTCGATAG	2016	0.3785	MHYSLLLPILIITLTLFFNHHHTTVSAKYYYPPSYYNCSTNNNYSPNSTYHINLKTLLSWLSSNSTPTTQIYNTTITESNTNNTIYGLFTCEIGDTYPSCKQCVTNATKHIAELCPMSKEATIYAAYCMVRYSNRYFFATVEESPKLSFMNKHNYVGPQFGRFNAILLNTMNDIRNSTSNVPNGSLKLKNAYKSVNITDNQTLYAMGNCIPYLSSYDCSWCLGDAIAEIRTSCCKGKTGGRIYFPSCSIRFELYPFYDTLASTTIQPPPLSTSTVPLSTLASPGEKRTKSIILVLVVVFPVVVTVVLLCLGCSCFIRRKQRKNQDKESFGDDVAILESLRFGLGEIESATNKFAKENMIGKGGFGEVYKGVLSNGEEVAVKRLSGSSKQGAREFKNEVLVIARLQHKNLVKLQGFCLDEQEKILIYEYVPNKSLDYFLFDPLKRRQLDWHERHKIIGGIARGILYLHEDSRLKIIHRDLKPSNILLDSSMNPKISDFGMARIVVTDNIEENTHRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKYSSSESDCVDIRKYAWTKWKNQTTLELLDPQMEGSLSQNDIIRCIHIALLCVQEDPNDRPTMAKVVSFLNNPSVDLPLLTEQSFFMKRTMEDNMVRKGLDSMDNSNCELTVSEIYPR	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g05674	671	Gene3D	Phosphorylase Kinase; domain 1	312	428	-	-
	Trre1g05674	671	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	317	428	-	-
	Trre1g05674	671	ProSiteProfiles	Protein kinase domain profile.	353	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05674	671	Gene3D	-	33	137	IPR038408	-
	Trre1g05674	671	Gene3D	-	146	256	IPR038408	-
	Trre1g05674	671	Pfam	Salt stress response/antifungal	38	134	IPR002902	-
	Trre1g05674	671	Pfam	Salt stress response/antifungal	158	254	IPR002902	-
	Trre1g05674	671	Pfam	Protein kinase domain	354	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05674	671	SUPERFAMILY	Protein kinase-like (PK-like)	339	643	IPR011009	-
	Trre1g05674	671	Gene3D	Transferase(Phosphotransferase) domain 1	429	630	-	-
	Trre1g05674	671	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	474	486	IPR008271	GO:0004672\|GO:0006468
	Trre1g05674	671	CDD	STKc_IRAK	359	625	-	-
	Trre1g05674	671	FunFam	cysteine-rich receptor-like protein kinase 10	429	630	-	-
	Trre1g05674	671	ProSiteProfiles	Gnk2-homologous domain profile.	31	137	IPR002902	-
	Trre1g05674	671	ProSitePatterns	Protein kinases ATP-binding region signature.	359	381	IPR017441	GO:0005524
	Trre1g05674	671	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	36	660	-	-
	Trre1g05674	671	SMART	serkin_6	353	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05674	671	ProSiteProfiles	Gnk2-homologous domain profile.	143	256	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05674	Trre-Chr1	61990205	61993336	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g05674	35	671	Receptor kinase-like Gene Family	AT4G05200	47.401	0.0	562

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre1g05674		Pkinase	3.5e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05674	-		-	tpra:123882552	1103.2