LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05673	ATGGGTTCCTTCCATTTTCTTATTTTACTTCCAACTTTATTTTCCCTCTTTGTTCATTGTTCTCCTTCTCCCATCCTACAAGCTGCAATTGATCCTGCTACGCATGCTTACTATAACTGCACAAGGAACAGCACTTCTGCAACCGATAACGCTTACCGTTCCAACATCAAAACACTCCTAGATTGGCTCTCCACCAATAGCAGTAACAATGCCAGATACTACAATACCACAGTTGCTAGCCAAAACACCGCGGACACTGTCTACGGTCTCTTCCTTTGTGTCGGCGACATTGACCTCAAAATCTGTCAGTTGTGTGTAATAGAAGCAGCCCAACTCATATCAACACTGTGCACCACAGCAAAAGAAGCCATAATTTGGTACAAAGTATGCTATGTGCAATATTCTGATCGTCGCTTCTTTTCCACCGTGGAGAAAAGTCCTCAAATTTCTTTCATGAACGATAAGGATTATGTAGGTGACATTGGGCGCTTCAACAACATTTTGTGGGATATGTTGAACGATTTGAGAAGAGAGAGGGGAAATACTTCTGCTAAATTGGTCAACAAGTCAGTGAACCTCACAGAAAACCAAAAACTATATGGCCACGCTTGGTGCCTCCCATATCTATCTGCAGAGAATTGCAGCTGGTGTCTTAGTGATGCCATAGCAGAAGTTCCAACCAAATGCTGCAGAGGAAAATCTGGGGGCACAATATTATACCCTAGTTGTGGTGTTAGATTCGAATTATATCCATTCCTCAAAGTACACAACAATATTACTTGGGTGCTGCCTCCACCCACAAGTCCTAGCCCTTCAGCTCCACCAGGAGAAAAAAGGACAAAGTCAATTATATTAGTGCTAGTTGTGGTTTTCCCGGTTGTTGTGACAGTGGTGATTTTATGTTTGGGTTGCGGCTGTTTTATAAGAAGGAAACAGAGGAAAAATCAGGAGACTATTCTCAAAGAAAGCTTTGGGGATGATGTTGCTACTTTAGAATCCTTGAGGTTTGGTTTAGGCGAAATCGAATCTGCAACAAATAAGTTTGCTAAACGAAATATGATTGGAGAAGGTGGATTTGGAGAAGTTTATAAGGGTGTACTTTCCAACGGGGAAGAGGTAGCTGTGAAGAGGCTTTTGGGAAGCTCTAAGCAAGGTGCAAAAGAATTTAAGAATGAGGTTCTTGTTATAGCTCGACTTCAGCACAAAAATCTAGTGAAATTACAAGGATTCTGTCTTGATGAACAGGAAAAGATACTCATATACGAATATGTACCTAACAAGAGTCTTGATTACTTTTTATTTGACACCCTAAAGAGAAAACAATTAGATTGGCATGAAAGGCACAAGATTATTGGAGGAATTGCTCGAGGAATTCTTTATCTTCATGAGGATTCACGCCTTAAAATTATACACCGTGATCTAAAACCTAGTAATGTTTTGCTAGATAGTAACATGGATCCAAAAATCTCAGATTTCGGTATGGCAAGAATTGTTGCTACGAATAATATTGAAGAAAACACACACAGAATTGTTGGAACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGCCAATTTTCAGTGAAATCTGATGTGTTTAGTTTTGGAGTAATGGTACTGGAGATTATCAGTGGAAAAAGGAAATATTCTTCCTCTGAATCAGATTGTGTTGATATACGGAACTATGCTTGGACAAAATGGAAAAACCAAACAACATTGGAACTATTGGATCCTCAAATGGAAGGATCTTTGTGTCAAAATGATATAATAAGATGCATCCATATCGCATTATTATGTGTACAGGAAGACCCTAATGATAGACCCACAATGGCAAAAGTTGTTTCCTTCCTCAACAATCCTTCAGTGGATTTGCCATTACTTACAGAACAGTCATTTTTCATGAAAAGAACAATGAAGGACAATATGGTCAGAATGGGATTGGAGTCTATCGATAATTCAAACTGTGAATTGACAGTGAGTGAGATTTACCCTCGATAG	2001	0.3933	MGSFHFLILLPTLFSLFVHCSPSPILQAAIDPATHAYYNCTRNSTSATDNAYRSNIKTLLDWLSTNSSNNARYYNTTVASQNTADTVYGLFLCVGDIDLKICQLCVIEAAQLISTLCTTAKEAIIWYKVCYVQYSDRRFFSTVEKSPQISFMNDKDYVGDIGRFNNILWDMLNDLRRERGNTSAKLVNKSVNLTENQKLYGHAWCLPYLSAENCSWCLSDAIAEVPTKCCRGKSGGTILYPSCGVRFELYPFLKVHNNITWVLPPPTSPSPSAPPGEKRTKSIILVLVVVFPVVVTVVILCLGCGCFIRRKQRKNQETILKESFGDDVATLESLRFGLGEIESATNKFAKRNMIGEGGFGEVYKGVLSNGEEVAVKRLLGSSKQGAKEFKNEVLVIARLQHKNLVKLQGFCLDEQEKILIYEYVPNKSLDYFLFDTLKRKQLDWHERHKIIGGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMDPKISDFGMARIVATNNIEENTHRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKYSSSESDCVDIRNYAWTKWKNQTTLELLDPQMEGSLCQNDIIRCIHIALLCVQEDPNDRPTMAKVVSFLNNPSVDLPLLTEQSFFMKRTMKDNMVRMGLESIDNSNCELTVSEIYPR	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g05673	666	CDD	STKc_IRAK	354	620	-	-
	Trre1g05673	666	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	39	643	-	-
	Trre1g05673	666	Gene3D	-	33	139	IPR038408	-
	Trre1g05673	666	Gene3D	-	148	252	IPR038408	-
	Trre1g05673	666	ProSitePatterns	Protein kinases ATP-binding region signature.	354	376	IPR017441	GO:0005524
	Trre1g05673	666	SUPERFAMILY	Protein kinase-like (PK-like)	334	637	IPR011009	-
	Trre1g05673	666	Gene3D	Transferase(Phosphotransferase) domain 1	424	625	-	-
	Trre1g05673	666	ProSiteProfiles	Gnk2-homologous domain profile.	145	252	IPR002902	-
	Trre1g05673	666	Pfam	Salt stress response/antifungal	162	250	IPR002902	-
	Trre1g05673	666	Pfam	Salt stress response/antifungal	40	136	IPR002902	-
	Trre1g05673	666	SMART	serkin_6	348	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05673	666	ProSiteProfiles	Gnk2-homologous domain profile.	34	139	IPR002902	-
	Trre1g05673	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Trre1g05673	666	Gene3D	Phosphorylase Kinase; domain 1	308	423	-	-
	Trre1g05673	666	Pfam	Protein kinase domain	350	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05673	666	ProSiteProfiles	Protein kinase domain profile.	348	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05673	666	FunFam	cysteine-rich receptor-like protein kinase 10	424	625	-	-
	Trre1g05673	666	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	309	423	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05673	Trre-Chr1	61981707	61985010	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g05673	12	666	Receptor kinase-like Gene Family	AT4G05200	44.494	0.0	558

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre1g05673		Pkinase	5.5e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05673	-		-	tpra:123882552	907.516