Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05664 ATGGTTCTATTCTCATCGAACAATTTCAATTCATTCATTCCTCAATTTCTCAATTCATTTCTTCGCGACCTAACGATTCCTCAAGATGCAAATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGAATTCCTCCTGACCAGCAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAATATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTTCGTGGAGGTATGCAGATCTTCGTCAAGACTCTCACAGGAAAGACCATCACTCTTGAGGTTGAAAGCTCTGACACGATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCTTGGCCGATTACAATATCCAGAAGGAGTCAACCCTCCATCTTGTGTTGCGTCTTCGTGGTGGTATGCAAATCTTCGTGAAGACCTTGACTGGAAAAACTATTACTCTTGAGGTGGAAAGCTCTGACACTATTGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGAATTCCCCCGGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGTCGTACCCTTGCCGACTACAATATCCAGAAGGAGTCAACCCTTCATCTTGTGCTTCGTTTGAGGGGTGGTATGCAGATATTTGTGAAGACTTTGACCGGCAAGACCATAACCTTGGAGGTGGAGAGCTCAGACACCATTGATAATGTCAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGATCAGCAGAGGTTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGAACTCTTGCGGATTACAATATCCAGAAGGAGTCTACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGTATGCAGATTTTTGTTAAGACCTTGACTGGTAAGACCATTACCCTGGAGGTGGAGAGCTCCGATACCATTGATAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAGCAGAGGTTGATCTTTGCAGGGAAACAGTTGGAGGATGGAAGGACCCTTGCTGACTACAATATTCAGAAGGAGTCTACCCTTCACCTTGTGCTCCGTCTCCGTGGTGGTTTTTAA 1176 0.4728 MVLFSSNNFNSFIPQFLNSFLRDLTIPQDANLRENSHRKDHHPRGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05664 391 SUPERFAMILY Ubiquitin-like 237 314 IPR029071 -
Trre1g05664 391 CDD Ubl_ubiquitin 87 162 - -
Trre1g05664 391 FunFam Polyubiquitin 3 239 314 - -
Trre1g05664 391 CDD Ubl_ubiquitin 239 314 - -
Trre1g05664 391 ProSitePatterns Ubiquitin domain signature. 189 214 IPR019954 -
Trre1g05664 391 Gene3D - 163 238 - -
Trre1g05664 391 Gene3D - 30 86 - -
Trre1g05664 391 Gene3D - 239 314 - -
Trre1g05664 391 Gene3D - 87 162 - -
Trre1g05664 391 Gene3D - 315 391 - -
Trre1g05664 391 ProSitePatterns Ubiquitin domain signature. 113 138 IPR019954 -
Trre1g05664 391 FunFam Polyubiquitin 3 163 238 - -
Trre1g05664 391 ProSiteProfiles Ubiquitin domain profile. 163 238 IPR000626 GO:0005515
Trre1g05664 391 PRINTS Ubiquitin signature 97 117 IPR019956 -
Trre1g05664 391 PRINTS Ubiquitin signature 118 138 IPR019956 -
Trre1g05664 391 PRINTS Ubiquitin signature 139 160 IPR019956 -
Trre1g05664 391 ProSitePatterns Ubiquitin domain signature. 341 366 IPR019954 -
Trre1g05664 391 ProSiteProfiles Ubiquitin domain profile. 315 390 IPR000626 GO:0005515
Trre1g05664 391 ProSiteProfiles Ubiquitin domain profile. 239 314 IPR000626 GO:0005515
Trre1g05664 391 SUPERFAMILY Ubiquitin-like 44 86 IPR029071 -
Trre1g05664 391 Pfam Ubiquitin family 317 388 IPR000626 GO:0005515
Trre1g05664 391 Pfam Ubiquitin family 165 236 IPR000626 GO:0005515
Trre1g05664 391 Pfam Ubiquitin family 44 84 IPR000626 GO:0005515
Trre1g05664 391 Pfam Ubiquitin family 241 312 IPR000626 GO:0005515
Trre1g05664 391 Pfam Ubiquitin family 89 160 IPR000626 GO:0005515
Trre1g05664 391 FunFam Polyubiquitin 3 87 162 - -
Trre1g05664 391 ProSitePatterns Ubiquitin domain signature. 265 290 IPR019954 -
Trre1g05664 391 ProSiteProfiles Ubiquitin domain profile. 87 162 IPR000626 GO:0005515
Trre1g05664 391 CDD Ubl_ubiquitin 163 238 - -
Trre1g05664 391 SUPERFAMILY Ubiquitin-like 85 162 IPR029071 -
Trre1g05664 391 CDD Ubl_ubiquitin 315 390 - -
Trre1g05664 391 SUPERFAMILY Ubiquitin-like 162 238 IPR029071 -
Trre1g05664 391 ProSiteProfiles Ubiquitin domain profile. 32 86 IPR000626 GO:0005515
Trre1g05664 391 SUPERFAMILY Ubiquitin-like 314 390 IPR029071 -
Trre1g05664 391 SMART ubq_7 163 234 IPR000626 GO:0005515
Trre1g05664 391 SMART ubq_7 239 310 IPR000626 GO:0005515
Trre1g05664 391 SMART ubq_7 17 82 IPR000626 GO:0005515
Trre1g05664 391 SMART ubq_7 315 386 IPR000626 GO:0005515
Trre1g05664 391 SMART ubq_7 87 158 IPR000626 GO:0005515
Trre1g05664 391 FunFam Polyubiquitin 3 315 390 - -
Trre1g05664 391 PANTHER UBIQUITIN 41 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05664 Trre-Chr1 61915242 61918308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05664 45 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.674 3.65e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05664 - K08770 han:110936586 676.011