Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g05660 | ATGGGCAGCTCTAACAACCCCTTGTACGATGAAGCAAAAAAGTATCTCAAAGAGGTGAAATATGCCTTTCGCAACAAGAAGCATATTTACATGTCATTCTTAAGACTCTTTAAAGATTTCAGGTGCCAAAGAATTGACTTAGAAAATGTCAAAGTAGAGGTGGCAAGGATGTTTCGAAACCATGGAGAATTAATTTCAGGATTCAACTACTTCTTGCCGGAAGGACATGAAATATAA | 237 | 0.3713 | MGSSNNPLYDEAKKYLKEVKYAFRNKKHIYMSFLRLFKDFRCQRIDLENVKVEVARMFRNHGELISGFNYFLPEGHEI | 78 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g05660 | 78 | FunFam | Paired amphipathic helix protein Sin3 | 11 | 73 | - | - | |
Trre1g05660 | 78 | Pfam | Paired amphipathic helix repeat | 28 | 72 | IPR003822 | GO:0006355 | |
Trre1g05660 | 78 | Gene3D | Paired amphipathic helix | 11 | 73 | IPR036600 | GO:0006355 | |
Trre1g05660 | 78 | ProSiteProfiles | PAH domain profile. | 5 | 75 | IPR003822 | GO:0006355 | |
Trre1g05660 | 78 | PANTHER | SIN3B-RELATED | 10 | 78 | IPR039774 | GO:0003714 | |
Trre1g05660 | 78 | SUPERFAMILY | PAH2 domain | 6 | 74 | IPR036600 | GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g05660 | Trre-Chr1 | 61892255 | 61892491 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g05660 | 11 | 78 | WRKY Transcription Factor Family | AT4G12020 | 32.353 | 5.22e-07 | 43.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Trre1g05660 | PAH | 2.1e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g05660 | - | K01710 | han:110921203 | 70.4774 |