Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05660 ATGGGCAGCTCTAACAACCCCTTGTACGATGAAGCAAAAAAGTATCTCAAAGAGGTGAAATATGCCTTTCGCAACAAGAAGCATATTTACATGTCATTCTTAAGACTCTTTAAAGATTTCAGGTGCCAAAGAATTGACTTAGAAAATGTCAAAGTAGAGGTGGCAAGGATGTTTCGAAACCATGGAGAATTAATTTCAGGATTCAACTACTTCTTGCCGGAAGGACATGAAATATAA 237 0.3713 MGSSNNPLYDEAKKYLKEVKYAFRNKKHIYMSFLRLFKDFRCQRIDLENVKVEVARMFRNHGELISGFNYFLPEGHEI 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05660 78 FunFam Paired amphipathic helix protein Sin3 11 73 - -
Trre1g05660 78 Pfam Paired amphipathic helix repeat 28 72 IPR003822 GO:0006355
Trre1g05660 78 Gene3D Paired amphipathic helix 11 73 IPR036600 GO:0006355
Trre1g05660 78 ProSiteProfiles PAH domain profile. 5 75 IPR003822 GO:0006355
Trre1g05660 78 PANTHER SIN3B-RELATED 10 78 IPR039774 GO:0003714
Trre1g05660 78 SUPERFAMILY PAH2 domain 6 74 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05660 Trre-Chr1 61892255 61892491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05660 11 78 WRKY Transcription Factor Family AT4G12020 32.353 5.22e-07 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g05660 PAH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05660 - K01710 han:110921203 70.4774