Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05657 ATGGTATCTTCTTCATCTTCATTCCTTGGTATCGATGACACCGTAGACGATTTCTACTTCTCTGTTGTCTCCGACGATGAAACCGACCCTAACCTCCCTGTCACAGATGACAGGTACGCTGAAGCATTACAGTTTCAAGAAACCTTGTTGGCCTCTCTCATCACTTCTCACCGAATCCCCTCCTCCATGTCACCACCGCCGCCATCATTTCCGTGCGTAGCATCTTCATCACAAACTGTTCATGAAGAGTTACTGTTGGAGGAAACCCTCATGGCCTCCTCCTCCACATTACAACCGGCATTTGTAGCATCTTCATCAAAGGCTATTGATGACACTGTTCTCACTGAAAAACAAGCTGATGAATCATCAATAGTCATTTGTGAGATTTGTACTGAAGCAAAAAGGACCAATGAAATGTTCAGGAACCAAAGATGTTACCATTCCTTTTGTTCTGAATGTGTCGTCAAACAAGTGTCCACAAAAATCCAAGACAACATAACAAATGTGTCTTGTCCTGGTTTGAATTGCAAGGGTTTGTTGGAGCTTGAATCTTGTAGGTCATTGCTTCCCAAAGAATTGATTGATAGGTGGGATGATGCATTATCGGAGGCTCTTTTACTTACTGTTCCTAAGTTCTATTGTCCTTTTAAAGATTGTTCTGCAATGTTGCTTACTGAGAATGAAGGTGTGGGAGATATTAGAGAATCTGAATGCCCTTTTTGTCATAGACTGTTTTGTGCAAGGTGTCTTGTTACTTGGCATCCTGGGGTTGGTTGTGAGGAGTACCAGAAATTGAATCCGAATGAAAGAGGGAGGGAAGATCTTCTTCTTAGAGAGCTGGCTAAAAAAAAGAAATGGAAAAGGTGTCCTAGATGCAGGCACTATATTGAAAAAAGGGATGGTTGTTTGCATATGACTTGCAGGTGCAAGTTTGAGTTTTGCTATGCTTGTGGAGAAACATGGACAACTAGTCATGGTGGTGGGTGCCAAAGATATTAG 999 0.4214 MVSSSSSFLGIDDTVDDFYFSVVSDDETDPNLPVTDDRYAEALQFQETLLASLITSHRIPSSMSPPPPSFPCVASSSQTVHEELLLEETLMASSSTLQPAFVASSSKAIDDTVLTEKQADESSIVICEICTEAKRTNEMFRNQRCYHSFCSECVVKQVSTKIQDNITNVSCPGLNCKGLLELESCRSLLPKELIDRWDDALSEALLLTVPKFYCPFKDCSAMLLTENEGVGDIRESECPFCHRLFCARCLVTWHPGVGCEEYQKLNPNERGREDLLLRELAKKKKWKRCPRCRHYIEKRDGCLHMTCRCKFEFCYACGETWTTSHGGGCQRY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05657 332 SUPERFAMILY RING/U-box 121 204 - -
Trre1g05657 332 CDD Rcat_RBR_unk 285 321 - -
Trre1g05657 332 FunFam RBR-type E3 ubiquitin transferase 122 208 - -
Trre1g05657 332 ProSiteProfiles Zinc finger RING-type profile. 127 172 IPR001841 -
Trre1g05657 332 Pfam IBR domain, a half RING-finger domain 211 259 IPR002867 GO:0008270
Trre1g05657 332 Pfam IBR domain, a half RING-finger domain 277 326 IPR002867 GO:0008270
Trre1g05657 332 CDD BRcat_RBR_unk 210 262 - -
Trre1g05657 332 ProSiteProfiles TRIAD supradomain profile. 123 332 IPR044066 -
Trre1g05657 332 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 321 IPR031127 GO:0004842|GO:0016567
Trre1g05657 332 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Trre1g05657 332 SUPERFAMILY RING/U-box 199 264 - -
Trre1g05657 332 SUPERFAMILY RING/U-box 270 330 - -
Trre1g05657 332 SMART ibrneu5 269 329 IPR002867 GO:0008270
Trre1g05657 332 SMART ibrneu5 195 259 IPR002867 GO:0008270
Trre1g05657 332 FunFam RBR-type E3 ubiquitin transferase 261 332 - -
Trre1g05657 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 205 IPR013083 -
Trre1g05657 332 Gene3D - 256 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05657 Trre-Chr1 61884939 61886023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05657 74 318 C3H Transcription Factor Family AT2G19610 27.757 4.51e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05657 K11975 - cave:132186566 350.903