Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05656 ATGAAATGTTCAGGAACCAAAGATGTTACCATTCCTTTTGTTCTGAATGTGCCATTGCTTCCGAAAGAATTGATTGATAGGTGGAATGATGCATTGTCTGGGGCTCTTTTACTTACTGTTCCTAAGTTCTATTGTCCCTATAAAGATTGTTCTGCAATGTTGCTTACTGAGAATGAAGGTGTGGGAGATATTAGAGAATCTGAATGCCCTTTTTGTCATAGACTGTTTTGTGCAAGGTGTCTTGTTACTTGGCATCTTGGGGTTGGTTGTGAGGAGTACCAGAAAATGAATCCGGATGAAAGAGGGAGGGAAGATCTTCTTGTTAGAGAGCTTGCTAATAAGAAGAAATGGAAAAGGTGTCCCAGATGCAAATACTATGTTGAAAAAGAGGATGGCTGTTTGCATATCACGTGCTTGTGCAACTTTGAGTTTTGCTATGCATGTGGTGGACAATGGACATCTACTCATGGTGGGTGCCAAAAATATTAG 489 0.4029 MKCSGTKDVTIPFVLNVPLLPKELIDRWNDALSGALLLTVPKFYCPYKDCSAMLLTENEGVGDIRESECPFCHRLFCARCLVTWHLGVGCEEYQKMNPDERGREDLLVRELANKKKWKRCPRCKYYVEKEDGCLHITCLCNFEFCYACGGQWTSTHGGCQKY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05656 162 SUPERFAMILY RING/U-box 101 159 - -
Trre1g05656 162 CDD Rcat_RBR_unk 116 152 - -
Trre1g05656 162 Gene3D - 93 162 - -
Trre1g05656 162 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 152 IPR031127 GO:0004842|GO:0016567
Trre1g05656 162 SMART ibrneu5 100 159 IPR002867 GO:0008270
Trre1g05656 162 SMART ibrneu5 26 90 IPR002867 GO:0008270
Trre1g05656 162 FunFam RBR-type E3 ubiquitin transferase 92 162 - -
Trre1g05656 162 CDD BRcat_RBR_unk 41 93 - -
Trre1g05656 162 Gene3D - 43 92 - -
Trre1g05656 162 SUPERFAMILY RING/U-box 34 95 - -
Trre1g05656 162 ProSiteProfiles TRIAD supradomain profile. 1 162 IPR044066 -
Trre1g05656 162 Pfam IBR domain, a half RING-finger domain 109 159 IPR002867 GO:0008270
Trre1g05656 162 Pfam IBR domain, a half RING-finger domain 43 90 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05656 Trre-Chr1 61878943 61880221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05656 42 150 C3H Transcription Factor Family AT2G19610 32.203 3.11e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05656 K11975 - msyl:126634144 233.032