Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05655 ATGGCGCAACAACAACAAACATCATCCTCACTTCTCTGTCTCGACACCGTAGACGATTTTTACTTCTCTGTTGTCTCCGACGATGAAACCGACCCTAACGTCCCCGTTTCCGATGACAAATACGCTGAAGCATTACAGTTTCAAGAAACCTTATTGTCCTCTCTCATCACTTCTTCTTCGTCATCGTTGCCTTGCGTGGCTTCTTCCTCCACGTTACCACCGCCATTACTCTGTGTAGCATCTTCATCAAAGACCGTTCATGTTGACACTGTCCGCACCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCAGATGATGAATCGTCTTCGATGATCATTTGTGAGATTTGTGCTGAACCAAAAACAAGTGATGAAATGTTCAGGAATCAACTATGTTACCATTCATTTTGTACTGAATGTGTTGTCAAACAAGTGGCAACAAAAATTCAAGAAAACATAACAAATGTATCTTGTCCTGGTTTGAATTGTAAGGGTTTGTTAGAACTTGAATCTTGTAGACCATTGCTTCCTAAAGAATTGATAGATAGATGGGATGATGCATTGTGTGAAGCACTTTTACTAACAGTTCCTAAATTTTACTGTCCTTTTAAGGATTGTTCTGCAATGTTGCTTGATGAGAATGAAGGAGTGGAAGATATTAGGGAATCTGAGTGTCCTTTTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTACTTGGCATCCTGGGATTGGTTGCGACGAGTATCAGAAATTGAATGCAGATGAAAGAGGCAGGGAAGATCTTCTTGTTAGGGAACTTGCTAATCAGAAGAAATGGAAAAGGTGTCCTAGATGCAGATACTATGTTGAGAAAAGGGATGGTTGTTTGCATATCACTTGCAGGTGCAAATTTGAGTTTTGCTATGCTTGCGGAGAAACATGGACAACTACTCATGGTGGATGCCAGAGAAATTAG 960 0.4042 MAQQQQTSSSLLCLDTVDDFYFSVVSDDETDPNVPVSDDKYAEALQFQETLLSSLITSSSSSLPCVASSSTLPPPLLCVASSSKTVHVDTVRTEEEEEEEEEEEPDDESSSMIICEICAEPKTSDEMFRNQLCYHSFCTECVVKQVATKIQENITNVSCPGLNCKGLLELESCRPLLPKELIDRWDDALCEALLLTVPKFYCPFKDCSAMLLDENEGVEDIRESECPFCHRLFCARCHVTWHPGIGCDEYQKLNADERGREDLLVRELANQKKWKRCPRCRYYVEKRDGCLHITCRCKFEFCYACGETWTTTHGGCQRN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05655 319 ProSiteProfiles TRIAD supradomain profile. 111 319 IPR044066 -
Trre1g05655 319 ProSiteProfiles Zinc finger RING-type profile. 115 160 IPR001841 -
Trre1g05655 319 Pfam IBR domain, a half RING-finger domain 199 247 IPR002867 GO:0008270
Trre1g05655 319 Pfam IBR domain, a half RING-finger domain 266 316 IPR002867 GO:0008270
Trre1g05655 319 CDD Rcat_RBR_unk 273 309 - -
Trre1g05655 319 SMART ibrneu5 183 247 IPR002867 GO:0008270
Trre1g05655 319 SMART ibrneu5 257 316 IPR002867 GO:0008270
Trre1g05655 319 FunFam RBR-type E3 ubiquitin transferase 110 196 - -
Trre1g05655 319 CDD BRcat_RBR_unk 198 250 - -
Trre1g05655 319 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 309 IPR031127 GO:0004842|GO:0016567
Trre1g05655 319 ProSitePatterns Zinc finger RING-type signature. 133 142 IPR017907 -
Trre1g05655 319 Gene3D - 245 319 - -
Trre1g05655 319 FunFam RBR-type E3 ubiquitin transferase 249 319 - -
Trre1g05655 319 SUPERFAMILY RING/U-box 187 252 - -
Trre1g05655 319 SUPERFAMILY RING/U-box 258 317 - -
Trre1g05655 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 193 IPR013083 -
Trre1g05655 319 MobiDBLite consensus disorder prediction 88 110 - -
Trre1g05655 319 SUPERFAMILY RING/U-box 110 192 - -
Trre1g05655 319 MobiDBLite consensus disorder prediction 93 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05655 Trre-Chr1 61865554 61867759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05655 115 306 C3H Transcription Factor Family AT2G19610 29.500 8.06e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05655 K11975 - cave:132186565 356.681