Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g05654 | ATGGAGCAACAACAAGATATTGTCCCCTATATCTCTGATGATGATGACAACTATGCTGAAGAGTTACAACTCCAACAAACCCTTATGGACTCACTCATCACTTCTAATTCTCATTCCCAAAATGCCCCCTCCTCTTCATCTGTACAATGGAAGCTTATGACCAAAGAGGAATCCTCTTCTTCAATCATCATTTGTGAGATTTGTGCAGAACCAAAAAAGACTGAGGAGATGTTTAACATTCAGACATGTTACCATTCCTTTTGTTCTGAATGTGTTATCAAACAAGTGACAACAAAAATCCAAGACAAAATATCAATTGTGTCTTGTCCTGGTTTGAATTGCAAAGGTGTGTTGGAGCTTGAATCTTGTAGGTCATTGCTTCCCAAAGAATTGATTGATAAGTGGTATGATTCATTGTGTGAGTCTCTTTTTGTTACTGTTCCTAAATTCTATTGTCCTTTTAAGGATTGTTCTGCTATGTTGTTGGATGAGAATGAAGGAGGAGAAGAAGAAGAAGAAGAGATTAGGGAATCTGAGTGTCCTTCTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGATTGGTTGTGAGGAGTATCAGAAGTTGAATATGGATGAGAGAGGGAGTGAAGATCTTCTTGTTAGAGAACTTGCTAATCAGAAACAATGGAGAAGGTGTCCTAAATGCAAATTCTATGTTGAAAAAAATGAAGGTTGTTTGCATATCACTTGCAGGTGCCGGTTTGAGTTTTGTTATGCTTGTGGAGAACAATGGAGTTCTACTCATGGTGGTTGCCAAACAGATTAG | 822 | 0.3844 | MEQQQDIVPYISDDDDNYAEELQLQQTLMDSLITSNSHSQNAPSSSSVQWKLMTKEESSSSIIICEICAEPKKTEEMFNIQTCYHSFCSECVIKQVTTKIQDKISIVSCPGLNCKGVLELESCRSLLPKELIDKWYDSLCESLFVTVPKFYCPFKDCSAMLLDENEGGEEEEEEIRESECPSCHRLFCARCHVPWHPGIGCEEYQKLNMDERGSEDLLVRELANQKQWRRCPKCKFYVEKNEGCLHITCRCRFEFCYACGEQWSSTHGGCQTD | 273 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g05654 | 273 | ProSiteProfiles | Zinc finger RING-type profile. | 65 | 110 | IPR001841 | - | |
| Trre1g05654 | 273 | SMART | ibrneu5 | 211 | 270 | IPR002867 | GO:0008270 | |
| Trre1g05654 | 273 | SMART | ibrneu5 | 133 | 201 | IPR002867 | GO:0008270 | |
| Trre1g05654 | 273 | FunFam | RBR-type E3 ubiquitin transferase | 60 | 146 | - | - | |
| Trre1g05654 | 273 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 144 | IPR013083 | - | |
| Trre1g05654 | 273 | Gene3D | - | 199 | 273 | - | - | |
| Trre1g05654 | 273 | FunFam | RBR-type E3 ubiquitin transferase | 203 | 273 | - | - | |
| Trre1g05654 | 273 | SUPERFAMILY | RING/U-box | 143 | 206 | - | - | |
| Trre1g05654 | 273 | Pfam | Zinc finger, C3HC4 type (RING finger) | 65 | 110 | IPR018957 | GO:0046872 | |
| Trre1g05654 | 273 | SUPERFAMILY | RING/U-box | 60 | 142 | - | - | |
| Trre1g05654 | 273 | CDD | Rcat_RBR_unk | 227 | 263 | - | - | |
| Trre1g05654 | 273 | Pfam | IBR domain, a half RING-finger domain | 220 | 270 | IPR002867 | GO:0008270 | |
| Trre1g05654 | 273 | Pfam | IBR domain, a half RING-finger domain | 150 | 201 | IPR002867 | GO:0008270 | |
| Trre1g05654 | 273 | CDD | BRcat_RBR_unk | 148 | 204 | - | - | |
| Trre1g05654 | 273 | ProSiteProfiles | TRIAD supradomain profile. | 61 | 273 | IPR044066 | - | |
| Trre1g05654 | 273 | ProSitePatterns | Zinc finger RING-type signature. | 83 | 92 | IPR017907 | - | |
| Trre1g05654 | 273 | SUPERFAMILY | RING/U-box | 212 | 270 | - | - | |
| Trre1g05654 | 273 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 37 | 264 | IPR031127 | GO:0004842|GO:0016567 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g05654 | Trre-Chr1 | 61858389 | 61859540 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre1g05654 | 65 | 260 | C3H Transcription Factor Family | AT2G19610 | 28.218 | 5.46e-23 | 95.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g05654 | K11975 | - | cave:132186565 | 325.094 |