Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05654 ATGGAGCAACAACAAGATATTGTCCCCTATATCTCTGATGATGATGACAACTATGCTGAAGAGTTACAACTCCAACAAACCCTTATGGACTCACTCATCACTTCTAATTCTCATTCCCAAAATGCCCCCTCCTCTTCATCTGTACAATGGAAGCTTATGACCAAAGAGGAATCCTCTTCTTCAATCATCATTTGTGAGATTTGTGCAGAACCAAAAAAGACTGAGGAGATGTTTAACATTCAGACATGTTACCATTCCTTTTGTTCTGAATGTGTTATCAAACAAGTGACAACAAAAATCCAAGACAAAATATCAATTGTGTCTTGTCCTGGTTTGAATTGCAAAGGTGTGTTGGAGCTTGAATCTTGTAGGTCATTGCTTCCCAAAGAATTGATTGATAAGTGGTATGATTCATTGTGTGAGTCTCTTTTTGTTACTGTTCCTAAATTCTATTGTCCTTTTAAGGATTGTTCTGCTATGTTGTTGGATGAGAATGAAGGAGGAGAAGAAGAAGAAGAAGAGATTAGGGAATCTGAGTGTCCTTCTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGATTGGTTGTGAGGAGTATCAGAAGTTGAATATGGATGAGAGAGGGAGTGAAGATCTTCTTGTTAGAGAACTTGCTAATCAGAAACAATGGAGAAGGTGTCCTAAATGCAAATTCTATGTTGAAAAAAATGAAGGTTGTTTGCATATCACTTGCAGGTGCCGGTTTGAGTTTTGTTATGCTTGTGGAGAACAATGGAGTTCTACTCATGGTGGTTGCCAAACAGATTAG 822 0.3844 MEQQQDIVPYISDDDDNYAEELQLQQTLMDSLITSNSHSQNAPSSSSVQWKLMTKEESSSSIIICEICAEPKKTEEMFNIQTCYHSFCSECVIKQVTTKIQDKISIVSCPGLNCKGVLELESCRSLLPKELIDKWYDSLCESLFVTVPKFYCPFKDCSAMLLDENEGGEEEEEEIRESECPSCHRLFCARCHVPWHPGIGCEEYQKLNMDERGSEDLLVRELANQKQWRRCPKCKFYVEKNEGCLHITCRCRFEFCYACGEQWSSTHGGCQTD 273
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05654 273 ProSiteProfiles Zinc finger RING-type profile. 65 110 IPR001841 -
Trre1g05654 273 SMART ibrneu5 211 270 IPR002867 GO:0008270
Trre1g05654 273 SMART ibrneu5 133 201 IPR002867 GO:0008270
Trre1g05654 273 FunFam RBR-type E3 ubiquitin transferase 60 146 - -
Trre1g05654 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 144 IPR013083 -
Trre1g05654 273 Gene3D - 199 273 - -
Trre1g05654 273 FunFam RBR-type E3 ubiquitin transferase 203 273 - -
Trre1g05654 273 SUPERFAMILY RING/U-box 143 206 - -
Trre1g05654 273 Pfam Zinc finger, C3HC4 type (RING finger) 65 110 IPR018957 GO:0046872
Trre1g05654 273 SUPERFAMILY RING/U-box 60 142 - -
Trre1g05654 273 CDD Rcat_RBR_unk 227 263 - -
Trre1g05654 273 Pfam IBR domain, a half RING-finger domain 220 270 IPR002867 GO:0008270
Trre1g05654 273 Pfam IBR domain, a half RING-finger domain 150 201 IPR002867 GO:0008270
Trre1g05654 273 CDD BRcat_RBR_unk 148 204 - -
Trre1g05654 273 ProSiteProfiles TRIAD supradomain profile. 61 273 IPR044066 -
Trre1g05654 273 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Trre1g05654 273 SUPERFAMILY RING/U-box 212 270 - -
Trre1g05654 273 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 264 IPR031127 GO:0004842|GO:0016567
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g05654 Trre-Chr1 61858389 61859540 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05654 65 260 C3H Transcription Factor Family AT2G19610 28.218 5.46e-23 95.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05654 K11975 - cave:132186565 325.094