LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05653	ATGTCTCATGATGAAGACTATGCTGAAGCGTTACAGTTTCAACAAACTCTTGCTGACTCGCTCATCACCTCCACGCCGCCGCCGCCACCACCACCGCAACCGTCGTTACTCTGCGTCGCATCTTCTTCATCAAAACATGTTGATGTTTCCATTGTCCTCAACATAGATCAGATAAAACTCGATACCAAAGAAGAATCAAATGAATCTTCTTCTTCTTCTTCAATCATCATTTGCGAGATTTGCGCAGAAACAAAAAAGACTGAAGAGATGTTTAACAATCAGAACTGTTCACATTCCTTTTGTTCTGAATGTGTTATCAAACAAGTGGAAACAAAAATCAATGAAAATATAGCAAATGTTTCTTGTCCTGGTTTGAATTGTAAAGGTGTAATTGAGCTTGAATCTTGCATTTCATTGCTTCCTAAAGAATTGTTTGATAAGTGGAATGATGCATTGTGTGAAGCACTTTTTTGTTCTGTTCCTAAATTTTACTGTCCTTTTAAGGATTGTTCTGCAATGTTGCTTGATGAAAATGAAGGTGTGGAAGATATTAGAGAATCTGAGTGTCCTTTTTGTCATAGGTTGTTTTGTGCAAGTTGTCATGTTCCTTGGCATCCTGGGATTGGTTGCGACGAGTATCAGAAATTGAATGTGGATGAAAGAGGGAGTGATGATCTTGTTGTTAGAGAGCTTGCTAATCAGAAAAAATGGAGAAGGTGTCCTACATGTAAATTTTATGTTGAAAAAAATGGAGGTTGTTTGCATATTACTTGCAGGTGCCGATTCGAGTTTTGTTATGCTTGTGGAGAACAATGGAGTTCTACTCACGGTGGTTGCCAATAA	843	0.3832	MSHDEDYAEALQFQQTLADSLITSTPPPPPPPQPSLLCVASSSSKHVDVSIVLNIDQIKLDTKEESNESSSSSSIIICEICAETKKTEEMFNNQNCSHSFCSECVIKQVETKINENIANVSCPGLNCKGVIELESCISLLPKELFDKWNDALCEALFCSVPKFYCPFKDCSAMLLDENEGVEDIRESECPFCHRLFCASCHVPWHPGIGCDEYQKLNVDERGSDDLVVRELANQKKWRRCPTCKFYVEKNGGCLHITCRCRFEFCYACGEQWSSTHGGCQ	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g05653	280	SUPERFAMILY	RING/U-box	149	215	-	-
	Trre1g05653	280	ProSiteProfiles	Zinc finger RING-type profile.	78	123	IPR001841	-
	Trre1g05653	280	Pfam	Zinc finger, C3HC4 type (RING finger)	78	123	IPR018957	GO:0046872
	Trre1g05653	280	Pfam	IBR domain, a half RING-finger domain	152	210	IPR002867	GO:0008270
	Trre1g05653	280	Pfam	IBR domain, a half RING-finger domain	230	279	IPR002867	GO:0008270
	Trre1g05653	280	Gene3D	-	208	280	-	-
	Trre1g05653	280	FunFam	RBR-type E3 ubiquitin transferase	212	280	-	-
	Trre1g05653	280	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	71	159	IPR013083	-
	Trre1g05653	280	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	58	272	IPR031127	GO:0004842\|GO:0016567
	Trre1g05653	280	CDD	Rcat_RBR_unk	236	272	-	-
	Trre1g05653	280	SMART	ibrneu5	220	279	IPR002867	GO:0008270
	Trre1g05653	280	SMART	ibrneu5	146	210	IPR002867	GO:0008270
	Trre1g05653	280	ProSiteProfiles	TRIAD supradomain profile.	74	280	IPR044066	-
	Trre1g05653	280	SUPERFAMILY	RING/U-box	73	159	-	-
	Trre1g05653	280	CDD	BRcat_RBR_unk	161	213	-	-
	Trre1g05653	280	FunFam	RBR-type E3 ubiquitin transferase	73	159	-	-
	Trre1g05653	280	SUPERFAMILY	RING/U-box	221	279	-	-
	Trre1g05653	280	ProSitePatterns	Zinc finger RING-type signature.	96	105	IPR017907	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05653	Trre-Chr1	61854108	61855069	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g05653	78	269	C3H Transcription Factor Family	AT2G19610	28.500	4.05e-19	84.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05653	K11975		-	qsu:112001859	323.168