Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05650 ATGGTGAGGGTTAGTGTCTTGAATGATGCTCTAAGGAACATTTACAATGCTGATAAACGTGGAAAGCGTCAAGTTATGATTAGGCCATCATCAAAAGTCATTATCAAATTCCTCATGGTCATGCAAAAGCATGGTTATATTGGGGAGTTCGAATACGTTGATGATCACAGGGCTGGAAAAATTGTTGTTCAATTGAATGGTAGATTGAACAAGTGTGGTGTTATTAGTCCTCGTTTTGATATCGGCGTCAAACAGGCGGTCGAAGGATGGACAGCAAGGCTGCTTCCCTCAAGACAGTTTGGATATATTGTTTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGCTGGTGGTAAAGTGTTGGGTTTTTTCTATTAA 396 0.4066 MVRVSVLNDALRNIYNADKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVQLNGRLNKCGVISPRFDIGVKQAVEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNAGGKVLGFFY 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05650 131 Pfam Ribosomal protein S8 7 131 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre1g05650 131 ProSitePatterns Ribosomal protein S8 signature. 101 118 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre1g05650 131 FunFam 40S ribosomal protein S15a 1 69 - -
Trre1g05650 131 FunFam 40S ribosomal protein S15a 70 131 - -
Trre1g05650 131 SUPERFAMILY Ribosomal protein S8 4 131 IPR035987 GO:0003735|GO:0005840|GO:0006412
Trre1g05650 131 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre1g05650 131 Gene3D - 1 69 - -
Trre1g05650 131 Gene3D - 70 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05650 Trre-Chr1 61826530 61828478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05650 1 131 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 90.076 1.14e-87 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05650 K02957 - ini:109156678 247.284