Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05647 ATGCAAGATTTTTTCGGTTCCCTTCGCCGATCCATAGTTTTCCCAACTCCACCCTCACACCCCGACGATGGACGACGCTTCACCGGAATCGCCAACAAAATTGGTTCCGCCATTCGCAAATCCAGAATCGGCCTCAAGTCTCCTCCTACTTCTTCTCCACCACCCATCCGGTGGCGTAAGGGCGAGTTGATCGGTTCTGGTGCCTTCGGTCGTGTCTACATGGGCATGAACCTCGACTCCGGCGAGCTTATTGCCGTCAAACAGGTTTTGATCGAGCCTGGTTTTGCTTTCAAAGCGAATACACAGGCTAATATTCGGGAGCTCGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAGCATCCAAATATTGTTAGATACTTGGGAACTGCTAGAGAGGAAGATTCCTTAAATATTCTGCTGGAGTTTGTACCTGGTGGATCTATCTCATCGCTATTGGGGAAATTCGGATCCTTTCCTGAATCCGTTATAAGAATGTATACAAAACAGCTTTTACAGGGGCTTGAATACCTTCACAATAACAGAATTATTCACAGGGATATTAAGGGTGCAAACATTCTAGTTGATAACAAAGGGTGTATTAAACTCGCAGACTTTGGTGCGTCCAGGAAAGTCGTGGAATTGGCTACCATGAATGGAACAAAGTCTATGAAGGGTACCCCACACTGGATGTCACCTGAAGTTATTTTACAGACAGGATATACAACCTCTGCTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCATGGAGTCAACAGTATCCCCAAGAGGTTTCCGCTCTTTTCTACATTGGGACAACTAGATCTCATCCACCCATACCAGAACATCTGTCTACTGAGGCAAAAGACTTTTTGCTGAAATGCTTTCACAAGGAACCAGATCTAAGACCATCTGCATCAGACTTGTTACTGCATCCTTTCATCACCTGCGAGTCTCTGGACACTCATTCAATATCATGCAGTTCAACCAGGGACTCTTGCAATCAGATGGCAACAAATGGGATGAACTCTAGAAACTTTTTGGGTTCTATCCAAGGATCAACATGCACAGGCCTAAAGGATGTTTGTCAGATGGATAGTTTAAAGTTCTCAACTGTATATCATGCAAATCCTCTAAATGCAGGTTCCTACCAAGGAGCAAACAATTATGATGATGACATGTGTCAGATAGATGATAAAGATGATTTCTTGGTTGCTTCATCAGCAAATTCAAAATCCTTACTTGCTGATGACGACATAAAGAGTTTCAATCCGATGTGCGAACCTGTGGAGGATGACTGGCCTTGCAAGTTTGACGAAACAGTAAATTTGAAGAAAAGCAGAATGAACTTGTCCCCAGATCAAACTATTAGGAAAACTATGAGTCCCGGACCATCTCCTAATGCAGATAATGAATTCTCGTTTTCAAGTGAACCTCTTGGAGTTGAAGATGATGATGAAGTGACAGAGTTCAAAATTAGAGCTTTCCTGGATGATAAGGCCTTTGAACTGAACAAGCTCCAAACACCTCTTTATGAAGAATTCTTTGGCAAATCAAATGCAGCCATTCCTCCTGTGCCTGTTGCAGCAGTTGCACAGAGTAAAGTTATTTCTGGTGTCTCAAATGTAACTTCAAAAAGCAGGTCTCCTAGTCAAGCTAAACGACGATTTTCGATGGCTAGCATTGCCATTGTAACAAGCCCTGGGAATGATAGAAAATATTTTGCGAAGCTTAGTGGTGTGACTGCCCATAGTAGACCTTTGCAGGAAATTCAGCCATCTGAGCTTAATGAATCAAAGGAGACTCTTCATGAAGCTGGGCTGGAATCATTTAGTGTTAGCTCAAGCTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAACTTGCTGAAGAGCTTGAGCGGACGCGAGAGGTGATGCGTCAAACAGGTGGAGGGAAGATAACATCCCCAAAGGATTGCAATTTTCTTAGAGATCGATAG 1998 0.4334 MQDFFGSLRRSIVFPTPPSHPDDGRRFTGIANKIGSAIRKSRIGLKSPPTSSPPPIRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIEPGFAFKANTQANIRELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQLLQGLEYLHNNRIIHRDIKGANILVDNKGCIKLADFGASRKVVELATMNGTKSMKGTPHWMSPEVILQTGYTTSADIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTRSHPPIPEHLSTEAKDFLLKCFHKEPDLRPSASDLLLHPFITCESLDTHSISCSSTRDSCNQMATNGMNSRNFLGSIQGSTCTGLKDVCQMDSLKFSTVYHANPLNAGSYQGANNYDDDMCQIDDKDDFLVASSANSKSLLADDDIKSFNPMCEPVEDDWPCKFDETVNLKKSRMNLSPDQTIRKTMSPGPSPNADNEFSFSSEPLGVEDDDEVTEFKIRAFLDDKAFELNKLQTPLYEEFFGKSNAAIPPVPVAAVAQSKVISGVSNVTSKSRSPSQAKRRFSMASIAIVTSPGNDRKYFAKLSGVTAHSRPLQEIQPSELNESKETLHEAGLESFSVSSSFSERQRKWKEELAEELERTREVMRQTGGGKITSPKDCNFLRDR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05647 665 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Trre1g05647 665 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 51 326 - -
Trre1g05647 665 SUPERFAMILY Protein kinase-like (PK-like) 57 333 IPR011009 -
Trre1g05647 665 Pfam Protein kinase domain 59 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05647 665 FunFam Serine/threonine-protein kinase STE11 55 148 - -
Trre1g05647 665 SMART serkin_6 58 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05647 665 CDD STKc_MAPKKK 57 321 - -
Trre1g05647 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Trre1g05647 665 Coils Coil 98 118 - -
Trre1g05647 665 Gene3D Transferase(Phosphotransferase) domain 1 57 353 - -
Trre1g05647 665 MobiDBLite consensus disorder prediction 642 665 - -
Trre1g05647 665 FunFam Mitogen-activated protein kinase kinase kinase 2 57 349 - -
Trre1g05647 665 ProSiteProfiles Protein kinase domain profile. 58 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05647 Trre-Chr1 61809794 61815773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05647 1 654 MAP Kinase Kinase Kinase AT3G06030 53.823 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre1g05647 Pkinase 4.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05647 - K20606 gmx:100795863 890.952