Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05642 ATGGATGAAGAGAAGAAACAAAACCAACAACAACACACCAAAACACTCATTGCTGCTCTCAACTTTCTCTCTCGCGACGTTCCTCTTCCCTCTCATCTTCTCAACTCCGTTTCTTCCATCTATCATCATAACAACAATGGCGATGTAGGGAATTCTGGAGATGATTTAATAACAGATCTTGAAGATGCATTATCGGAACAGCGTACAAAATGTGCATCGGGTTTCAAGTTGGAGGAAGCGATGGAAAGCCGTCATCAAAGTCAGATTCAGCATCGGTTAAATGAGCTGGAAGAATTACCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACAGGAAATTGTTTGATTGGGGAATGATGAGATTGCGCCGTCCATCATATGGAGTTGGAGATCCATTTGCCATGGATGCTGATGATCGATTAAGGAAGAAGCGGGATTCTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATCAAATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATAATAAATACCGTCCGCGAGATGCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGACGGTATCCAGGCATGGCATGGAAGGCAAAGACAGAGGGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCCGTTCAACGTCAGAAGGACTTCAAACACTCAGATGGTATTGAGCCCTTGGAAGATTCTGAAGCTGATTTACCCGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAATCACCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGGGATTCTAATGATTTACTTGAAGGTCAGCGACAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTCCAATGGATGCTTTCCTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACAATTTCTCTCATAGCACATCTTTTTGAATACAAAGGTGTGACAGGCCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATTATTGAATTCTCAACGTGGGCTCCTAGCATTAAAACTATCCTTTATGATGGACGGATGGATGAGAGAAAAGCAATAAAGGAAGAATATTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCGTTTCTGAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCTGTTCTAGCAAAAACATTGGATAATAGCTATAACATCCAACGGAGACTTTTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAACTATGGTCCCTGCTTAATTTTCTCCTTCCGAACATTTTTAACTCCGTTCAAAATTTCGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACAGCTATTAATCATTCGGCGTCTGCATCAAGTAATTAGGCCCTTCATATTAAGAAGGAAAAAGAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAGTGTGATATGTCAGCCTGGCAGAAAGTTTATTATCAACAAGTTACTGATGTAGGCAGAGTTGGTTTGGACAACGGTTCTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAGATGTAAAGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTTGAAGTTTATTTAAGACTTCATGACTTTAAGTATCTTAGACTTGATGGCTCAACGAAAACTGAAGAAAGGGGCACTCTACTACGGAAATTTAATGCCCCTGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGTGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGAATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACGTCAACAGCCCAGGACAGACGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTGCCTAGTGAAAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGATGTTTGAGAAAATGGATGAAGAGAGGAGACAAAAGGAAAACTACAAATCACGTCTCATGGAAGAGCGTGAATTGCCAGATTGGGTGTATGCTCCAATTCAAAAGGATGACAAGGCCAAAAACTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGATGTGGTATATGCTGATACATTGAGTGAATTACAATGGATGAAAGCTATGGAGAATGGGGAGGATGTGTCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGATTACCTCTCATCTGACAGCATAGCACGAGCCAGCGATGATACAGGGGCAGTTGAAAGCTTATTAGGGCCAAGGACTAAAATTGCCCCCATGGCAAATGAGAAAACGAGTGAAGACAGTTTCCATGTTACTCCTTCCTTAAAGAGATTCAAGCCTGACGGAACAAATTTCCAGAAACATGCATACGAAGATGTCAGCGGAAGTGGTTTGAACCAGAATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCCTGGCCAGGGTTCATTACCCGATAGCAGAGGGCAGAGTTCCAATGGAAGAGCAAACTGGAACTGA 3258 0.415 MDEEKKQNQQQHTKTLIAALNFLSRDVPLPSHLLNSVSSIYHHNNNGDVGNSGDDLITDLEDALSEQRTKCASGFKLEEAMESRHQSQIQHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNVECAYPDRKLFDWGMMRLRRPSYGVGDPFAMDADDRLRKKRDSERLSRLEEVEKNQIETTKRRFFAEIINTVREMQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDFKHSDGIEPLEDSEADLPESDASKNGISKESPVDEDIDAIDSDHNDGDSNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLFEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWMFEKMDEERRQKENYKSRLMEERELPDWVYAPIQKDDKAKNFNSGVTGKRKRKDVVYADTLSELQWMKAMENGEDVSKLSAKGKRRESRDYLSSDSIARASDDTGAVESLLGPRTKIAPMANEKTSEDSFHVTPSLKRFKPDGTNFQKHAYEDVSGSGLNQNVFSWNTHKKKRSSHPGQGSLPDSRGQSSNGRANWN 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05642 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Trre1g05642 1085 MobiDBLite consensus disorder prediction 1007 1031 - -
Trre1g05642 1085 Coils Coil 890 913 - -
Trre1g05642 1085 SMART helicmild6 718 802 IPR001650 -
Trre1g05642 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 859 IPR027417 -
Trre1g05642 1085 SMART SnAC_2 895 955 IPR029295 GO:0042393
Trre1g05642 1085 Gene3D - 613 833 IPR027417 -
Trre1g05642 1085 MobiDBLite consensus disorder prediction 963 985 - -
Trre1g05642 1085 Gene3D - 369 612 IPR038718 -
Trre1g05642 1085 FunFam Chromatin structure-remodeling complex protein SYD 369 612 - -
Trre1g05642 1085 SMART ultradead3 374 567 IPR014001 -
Trre1g05642 1085 Pfam Helicase conserved C-terminal domain 689 802 IPR001650 -
Trre1g05642 1085 MobiDBLite consensus disorder prediction 963 981 - -
Trre1g05642 1085 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 556 IPR014001 -
Trre1g05642 1085 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 853 IPR001650 -
Trre1g05642 1085 Pfam SNF2-related domain 381 669 IPR000330 GO:0005524|GO:0140658
Trre1g05642 1085 Pfam Snf2-ATP coupling, chromatin remodelling complex 895 955 IPR029295 GO:0042393
Trre1g05642 1085 MobiDBLite consensus disorder prediction 298 349 - -
Trre1g05642 1085 MobiDBLite consensus disorder prediction 1066 1085 - -
Trre1g05642 1085 FunFam Probable ATP-dependent DNA helicase CHR12 609 908 - -
Trre1g05642 1085 CDD SF2_C_SNF 680 813 - -
Trre1g05642 1085 PANTHER SNF2/RAD54 HELICASE FAMILY 81 968 - -
Trre1g05642 1085 MobiDBLite consensus disorder prediction 1045 1085 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05642 Trre-Chr1 61731384 61741614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05642 685 860 RAD5 or RAD16-like Gene Family AT5G43530 33.708 8.43e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g05642 SNF2_N 7.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05642 - - gmx:100786280 1868.59