Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05641 ATGGCTTCTTCAACCAAAGAGATAGACAGAGAACTTCCACCTCTTCTCCGTGTCTACAAAGATGGAACAGTTGAACGTTTCTTAGGCTCTTCAATTGTACCACCAATCCCTCTTGATCCAGAAACAAATGTTTCATCAAAAGACATAATAATCTCACAAAACCCATTAATCCAAGCTCGTATTCATCTTCCAAAACTCACCAACCAAACACAAAAGCTTCCAATTTTAGTTTATTATCATGGTGGTGCTTTTTGTCTTGAATCAGCTTTCTCTTTCCTTCACCAACGTTATCTCAACATTATTGCTTCACAATCAAATGTTCTTGTTGTTTCTGTTGAATATAGACTTGCACCAGAACATCCTCTTCCTGCTGCATATGATGATGGTTGGTTTTCTCTCAAATGGGTCACTTCACATTCCATTGAAAATGAAAACAACAATAACATCATCACCAATATTGAACCATGGTTAATCAAACATGGTGATTTTGATAGATTTTACATTGGTGGTGATACTTCAGGTGCAAATATTGCACATAATGCACTTCTTCGTGTTGGTGGTAATGGTGTTGAATCTTTACCTGGTGATGTGAAAATCAAAGGAGCATTACTTGCTTTTCCTTTGTTTTGGAGTTCAAAACCAGTTTTATCAGAACCTGTTGAAGAACATGAACAGAGTTCACCAATGAAAGTTTGGAATTTTGTGTATCCTGATGCAGTTGGTGGAATTGATAATCCTTTGATTAATCCTTTGGCAGATGATGCTCCTAGTTTGGACATAATTGGTTGTCCTAAGATGTTGATTTTTGTTGCTGGTAAGGATGATTTAAGAGACAGAGGGATTTGGTACTATGAAGCTGTTAAGAAAAGTGGTTGGAAAGGTGATGTGGAACTTGTTCATGTTGAAGGTGAAGAACATTGTTTTCAGATTTATCATCCTGAAACTCAGAATTCTATTGATATGGGTTTCCCTCCACACTCTCACTATTCTATTCAAATTCAACATTTTCCCAACTCCTCCTTCACACTGCACTGCACCATCAATTCCCAAATCAACAAAAAAGGTTTGATTTCTATGGAGCTGAATTCGCAGAACAGACCATTTTCGATCAAATTATGGCCTCCTAGTCAGAACACTAGACAGACGCTTGTGGAGAAGTTGACCAACAATCTTACTACGAAATCTATTTTCACGCAGAAGTATGAAACTTTGGACAAGGAAGAGGCTGCAGAAAATGCTAAAAAGATTGAAGACACGGCTTTTGCCACAGCAAACTTGCATTATGAGAATGAACCAGATGGTGATGGAGGTTCTGCAGTCCAGCTTTATGCAAAAGAATGTAGTAAGCTCCTCCTTGAAGTGCTTAAAAGAGGACCCGGTAAAAACAGTGACAAAGAAGTGGTGATATCTGATGATGCTGCTGTCCTTCGTGAATCTGTTTTTGATATCTCTAAAGGCCAAAGGGCTTTCATTGAAGCGGAGGAGGCTCGTGAACTTTTGAGCCCATTGAAGGAGCCGGGAAATTCATTCACTAAAATATGCTTCAGTAACAGAAGTTTTGGGGTAGGAGCAGCAGAAGTCGCTAAGCCGATTCTCATATCCCTCAAGGACCAGTTGAAAGAAGTAGACCTATCAGATTTTATTGCTGGAAGACCAGAAGCAGAAGCACTTGATGTGATGAGGATTTTCTCAGATGCTCTAGAGGGCTGTGTCTTGAAGTATTTAAACCTTTCTGACAATGCTTTAGGTGAGAAAGGTGTTAGAGCATTTGGAACTCTCTTGAAATCACAAAGTTGCCTAGAGGAGCTTTATCTTATGAATGATGGAATTTCAGAAGAAGCTGCTCAAGCAGTTTCTGAGTTTATTCCTTCCACAGAGAAGCTCAAAGTTCTTCATTTTCATAATAATATGACTGGAGATGAAGGAGCACTTGCTATAGCTGAGGTTGTGAAGCGTTCTCCTTCCTTGGAGGATTTCCGCTGTTCCTCCACGAGAATAGGCGATGAAGGTGGAGTTGCCTTATCTGATGCTTTAGGGAATTGTACCCATTTGAGGAAGCTTGATTTGCGAGACAACATGCTAGGTGTTGAGGGTGGGATTTCTCTGAGTAAAGCTCTTGCCAAGCATGCAGAGTTAAGAGAGGTATACCTGAGCTACCTGAACGTGGAAGATGAAGGAGCAATTGCTATAGCTAATGCTCTTAAGGAATCAGCTCCTCACCTTGAAATTCTCGAGATGAGTGGAAATGAAATTACGGTTGATGCTGCTCCTGCTATAGTAGACTGCCTAGCAACAAAGCAGTTTCTTGCCAAGTTGAACCTCTCTGAGAATGAATTCAAGGATGAAGGTGCCATCCAGATAAGTAAGGCTTTAGAAGGCCTTGACCAGTTAAAGGAAATTGATCTAAGTTCCAACAAAATAACCAGAGACGGGGCCCGACAATTGGCTCTCACTGTGGTGCAGAAGGCTGATTTTAAACTTCTAAACGTAAATGGAAACTTTATTTCTGAAAATGGCATTGAGGAGTTGATTGTTATATTTAAAGACTCTCCAGACATGTTGGGTCCATTAGATGAAAATGACCCTGATGGTAAAGACGAAGATGAAGAATCTAACGAAGGTGGTTCGGAGGATGAACTGGAATCCAAAATGAAGAACCTTGTGGTTGATTGA 2673 0.4007 MASSTKEIDRELPPLLRVYKDGTVERFLGSSIVPPIPLDPETNVSSKDIIISQNPLIQARIHLPKLTNQTQKLPILVYYHGGAFCLESAFSFLHQRYLNIIASQSNVLVVSVEYRLAPEHPLPAAYDDGWFSLKWVTSHSIENENNNNIITNIEPWLIKHGDFDRFYIGGDTSGANIAHNALLRVGGNGVESLPGDVKIKGALLAFPLFWSSKPVLSEPVEEHEQSSPMKVWNFVYPDAVGGIDNPLINPLADDAPSLDIIGCPKMLIFVAGKDDLRDRGIWYYEAVKKSGWKGDVELVHVEGEEHCFQIYHPETQNSIDMGFPPHSHYSIQIQHFPNSSFTLHCTINSQINKKGLISMELNSQNRPFSIKLWPPSQNTRQTLVEKLTNNLTTKSIFTQKYETLDKEEAAENAKKIEDTAFATANLHYENEPDGDGGSAVQLYAKECSKLLLEVLKRGPGKNSDKEVVISDDAAVLRESVFDISKGQRAFIEAEEARELLSPLKEPGNSFTKICFSNRSFGVGAAEVAKPILISLKDQLKEVDLSDFIAGRPEAEALDVMRIFSDALEGCVLKYLNLSDNALGEKGVRAFGTLLKSQSCLEELYLMNDGISEEAAQAVSEFIPSTEKLKVLHFHNNMTGDEGALAIAEVVKRSPSLEDFRCSSTRIGDEGGVALSDALGNCTHLRKLDLRDNMLGVEGGISLSKALAKHAELREVYLSYLNVEDEGAIAIANALKESAPHLEILEMSGNEITVDAAPAIVDCLATKQFLAKLNLSENEFKDEGAIQISKALEGLDQLKEIDLSSNKITRDGARQLALTVVQKADFKLLNVNGNFISENGIEELIVIFKDSPDMLGPLDENDPDGKDEDEESNEGGSEDELESKMKNLVVD 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05641 890 SMART LRR_RI_2 766 793 - -
Trre1g05641 890 SMART LRR_RI_2 738 765 - -
Trre1g05641 890 SMART LRR_RI_2 625 652 - -
Trre1g05641 890 SMART LRR_RI_2 569 596 - -
Trre1g05641 890 SMART LRR_RI_2 822 849 - -
Trre1g05641 890 SMART LRR_RI_2 597 624 - -
Trre1g05641 890 SMART LRR_RI_2 794 821 - -
Trre1g05641 890 SMART LRR_RI_2 681 708 - -
Trre1g05641 890 SMART LRR_RI_2 653 680 - -
Trre1g05641 890 SMART LRR_RI_2 709 736 - -
Trre1g05641 890 MobiDBLite consensus disorder prediction 854 890 - -
Trre1g05641 890 SUPERFAMILY RNI-like 490 868 - -
Trre1g05641 890 Pfam WPP domain 369 463 IPR025265 -
Trre1g05641 890 Pfam alpha/beta hydrolase fold 76 309 IPR013094 GO:0016787
Trre1g05641 890 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 362 889 IPR045203 GO:0005096
Trre1g05641 890 Gene3D Ribonuclease Inhibitor 768 863 IPR032675 -
Trre1g05641 890 Gene3D alpha/beta hydrolase 12 321 IPR029058 -
Trre1g05641 890 SUPERFAMILY alpha/beta-Hydrolases 14 314 IPR029058 -
Trre1g05641 890 Gene3D WPP domain 369 467 IPR038214 -
Trre1g05641 890 Pfam Leucine Rich repeat 712 731 IPR001611 GO:0005515
Trre1g05641 890 Pfam Leucine Rich repeat 680 703 IPR001611 GO:0005515
Trre1g05641 890 Pfam Leucine Rich repeat 572 590 IPR001611 GO:0005515
Trre1g05641 890 Pfam Leucine Rich repeat 767 787 IPR001611 GO:0005515
Trre1g05641 890 Pfam Leucine Rich repeat 797 816 IPR001611 GO:0005515
Trre1g05641 890 MobiDBLite consensus disorder prediction 861 876 - -
Trre1g05641 890 Gene3D Ribonuclease Inhibitor 484 767 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05641 Trre-Chr1 61724151 61730227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05641 7 321 Carbohydrate Esterase AT3G48690 39.375 2.04e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05641 K14319 - gmx:100785942 843.573