Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05640 ATGAGTAGATCAAAAAGAGTAGATGCATTGATTTTTGAATCATTGCCATTTTTATTGGAAGTAAGAGAAGTGTTTCAAGATAAGAGGGAAAAGTATCAACAATTTTTACAACTCATGCTTGATTTCAAGGACGGAAGAGTTGATACTGAAGCTGTGAAAGAAGGAGTGATGGAGTTGTTTAAAGAGCACAATCATTTAATTTCGAGATTCAACATTTTCTTACCACCGGGACATAAAATCCGGCTTCCATCGGATGATGAACAACAACATGAAGACGAATCCGCGATCAAAGATGAACAGAAAGATGATGAACAACAAAGTGATGATGGATTAGCTTTGAAAGATGAACAGAAAGATGATGAAGAATAA 369 0.3523 MSRSKRVDALIFESLPFLLEVREVFQDKREKYQQFLQLMLDFKDGRVDTEAVKEGVMELFKEHNHLISRFNIFLPPGHKIRLPSDDEQQHEDESAIKDEQKDDEQQSDDGLALKDEQKDDEE 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05640 122 PANTHER SIN3B-RELATED 15 97 IPR039774 GO:0003714
Trre1g05640 122 MobiDBLite consensus disorder prediction 80 114 - -
Trre1g05640 122 Gene3D Paired amphipathic helix 14 75 IPR036600 GO:0006355
Trre1g05640 122 MobiDBLite consensus disorder prediction 78 122 - -
Trre1g05640 122 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Trre1g05640 122 SUPERFAMILY PAH2 domain 11 76 IPR036600 GO:0006355
Trre1g05640 122 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Trre1g05640 122 ProSiteProfiles PAH domain profile. 3 77 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05640 Trre-Chr1 61721550 61721918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05640 13 86 WRKY Transcription Factor Family AT4G12020 38.667 4.43e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g05640 PAH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05640 K11644 - mtr:11416202 142.124