Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05637 ATGAACAACTCTAGCAACCCCTCGTTCGATGATGCAATAAAGTACGTTAATGAGGTGAAAGATGCCTTTCGTGACGAGAAGCATATGTACATGGCATTCTTAAGGCTCCTGGAGGATTTCAAATCCCAAAGGAAAAACATAGAAATTGTGAAGGAAGAAATAGCAGAAATATTCCAAGACCGTAAAGATTTAATTTCGGGATTCAACTTCTTCTTGCCAACAGGACATGAAAATATAATGGCACTTCCATCGCATGATGAACAACAAGGTGATGATAAATCAGCATCCAAAGACGATTGGTGTGGTATAAAACCCCATCACGTTGAATCATTGCTTGTACTCTTGCTGTGCACTCTAATTGTGTTCTTTCTCTTTTCTTGCAATTTATTTCTTGATCAACATTTCTATTTTGCATGA 417 0.3765 MNNSSNPSFDDAIKYVNEVKDAFRDEKHMYMAFLRLLEDFKSQRKNIEIVKEEIAEIFQDRKDLISGFNFFLPTGHENIMALPSHDEQQGDDKSASKDDWCGIKPHHVESLLVLLLCTLIVFFLFSCNLFLDQHFYFA 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05637 138 SUPERFAMILY PAH2 domain 4 74 IPR036600 GO:0006355
Trre1g05637 138 Pfam Paired amphipathic helix repeat 30 72 IPR003822 GO:0006355
Trre1g05637 138 Gene3D Paired amphipathic helix 11 73 IPR036600 GO:0006355
Trre1g05637 138 ProSiteProfiles PAH domain profile. 5 75 IPR003822 GO:0006355
Trre1g05637 138 PANTHER SIN3B-RELATED 10 79 IPR039774 GO:0003714
Trre1g05637 138 FunFam Paired amphipathic helix protein Sin3 11 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05637 Trre-Chr1 61698663 61699079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05637 11 86 WRKY Transcription Factor Family AT4G12020 35.526 3.26e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g05637 PAH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05637 - K11644 ahf:112791856 80.4925