Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05635 ATGATCCATCTAAAACAAATGCTGCAGCACTTCAAAATCTCCATCACTACCTATGTTTTCCTTTGTTTCACATTATTAATTATAACCACAAAAACAACTCAAGCAGCTACAGACCAATCCTTTGTTCAATATTTCTGTCCAAACACAAACACTTTTTCTCCAAATGCAACCTACCAAACAAACCTCAACAAACTTCTTTCTATTCTTTCATCAAATTCCACCAACAAAAATGGCTTCTACTACACCACAGTCGGCGAAAACAACCCTGGAAACACTGTATACGGTGCCTTTCTCTGCCGTGGAGATCTCACACAAAACGAATGCAAAGACTGTGTTTCCACAGCATCCAAACAAATCCTTCAAGACTGTCCTAAATCAAAAGAATCAGTTATTTGGTTAGCTGAATGCATGATACGTTACTCAAACATTTCATTCTTCAACTTAGCTGCAGAAGTTCCTGTGCTTGCTCTCATGAACACTGGTACTGTGATGGAGCCAAACCGGTTCATGCAACTTTTAGCGGATACAATGAACGCCGCAACAGTAGAGGCAGTGAATGGTGGAGGTGACAAGAAGTTTGGAACCAAAGAAGCAAATTTTTCTAACTTTCAAACATTGTATACACTTGCACAGTGTACACCGGATTTGTCAATGTCAGGATGTGAAAAATGCTTAAAAATAGCAACTAATGTATTACCATCTTGCTGTAGTGGAAAACAAGGTGGAAGAGCGCTTATTCCAAGTTGTAATATTAGGTATGAAGTTTATCCGTTTTATCACGAGTTGAATGTGCCTGCTCCAGATGAACCAAGGCCGAGTCCACAAGGAAAAAAATCCCGGAACTCATTAGTGATAATTGTTGCAATTGTAGTTCCTATTGTGGTTACTTTGCTGCTTACATTGTTTGTCTGTTGGATCATATCTGAAAGGAAAAGAAGAAAGTTCGATTCAGTGCCTCAAGAAAGTGTTGAAATCTCCAGAGTAGAATTCTTGCAATTTGATTTTGATACTATCGAAGCAGCCACAAACAACTTCTGTGATGACAATAAATTGGGGGAAGGAGGATTTGGCGAGGTTTACAAGGGTAAGCTATTTAATGGACAAGAGATTGCTGTGAAGAGGCTATCAAGAGGTTCTAGTCAAGGCACAGAAGAATTCAAGAATGAGGTGGTTTTGGTAGCTAAACTACAACACAGAAATCTTGTTAGGATTCTTGGTTTTTGCTTGGATGGTGAAGAAAAAATGCTTATCTATGAGTTCATGCCCAACAAAAGTCTAGACTATTTTCTATTTGATCCTGAAAAAGCACAGCAGATTAATTGGCCAAGACGATACAAGATAATTGAAGGAATTGCACGAGGAATGCTTTACCTTCATGAAGATTCACGACTTAGAATCATACATCGTGACCTGAAAGCTAGTAATATATTATTAGATGAGTATTTAAATCCTAAAATTTCAGATTTTGGGATGGCAAGAATTTTTGGTGTTGATCAAACCCGAGGAATCACAAGGAGAGTTGTCGGAACACTAGGTTACATGTCTCCAGAGTATGCAATGCATGGAGAGTTTTCTATCAAAACAGACGTGTATAGCTTTGGTGTCCTTGTTCTCGAAATAATTACCGGAAAGAAGATCACATCCTTCCGCGAATCAGGCTATGCCGAGGACCTCTTGAGCTATACTTGGAAAAAATGGAATGAAGGGACACCATTGGAGTTACTAGACACAACATTAAGAGATTCATACTCAAGTGTTGAAGTAACAAAATGCATCCATGTTGGATTATGTTGTATTCAAGAAGATCCAAATCAAAGACCATCCATGCAAACAATAGTTCTATTGCTAAGTAGCCATTCAGTAACTCTTGAAGCACCTCAAAGACCAGCAGGTTATTTTAATAGCAAAACTGATCAAAGCATTTCAAGAATAGATTTTGAGAATTCAAACATGTCTACAAATACAAGCCATTTATCAGTCCCAGTTTCTGTTGATGATGCATCAATCACTCAGGTGTACCCTCGGTAG 2028 0.3836 MIHLKQMLQHFKISITTYVFLCFTLLIITTKTTQAATDQSFVQYFCPNTNTFSPNATYQTNLNKLLSILSSNSTNKNGFYYTTVGENNPGNTVYGAFLCRGDLTQNECKDCVSTASKQILQDCPKSKESVIWLAECMIRYSNISFFNLAAEVPVLALMNTGTVMEPNRFMQLLADTMNAATVEAVNGGGDKKFGTKEANFSNFQTLYTLAQCTPDLSMSGCEKCLKIATNVLPSCCSGKQGGRALIPSCNIRYEVYPFYHELNVPAPDEPRPSPQGKKSRNSLVIIVAIVVPIVVTLLLTLFVCWIISERKRRKFDSVPQESVEISRVEFLQFDFDTIEAATNNFCDDNKLGEGGFGEVYKGKLFNGQEIAVKRLSRGSSQGTEEFKNEVVLVAKLQHRNLVRILGFCLDGEEKMLIYEFMPNKSLDYFLFDPEKAQQINWPRRYKIIEGIARGMLYLHEDSRLRIIHRDLKASNILLDEYLNPKISDFGMARIFGVDQTRGITRRVVGTLGYMSPEYAMHGEFSIKTDVYSFGVLVLEIITGKKITSFRESGYAEDLLSYTWKKWNEGTPLELLDTTLRDSYSSVEVTKCIHVGLCCIQEDPNQRPSMQTIVLLLSSHSVTLEAPQRPAGYFNSKTDQSISRIDFENSNMSTNTSHLSVPVSVDDASITQVYPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05635 675 Gene3D - 38 145 IPR038408 -
Trre1g05635 675 Gene3D - 152 258 IPR038408 -
Trre1g05635 675 SUPERFAMILY Protein kinase-like (PK-like) 330 652 IPR011009 -
Trre1g05635 675 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Trre1g05635 675 Gene3D Transferase(Phosphotransferase) domain 1 421 628 - -
Trre1g05635 675 FunFam Cysteine-rich receptor-like protein kinase 10 308 420 - -
Trre1g05635 675 FunFam cysteine-rich receptor-like protein kinase 10 421 623 - -
Trre1g05635 675 ProSiteProfiles Gnk2-homologous domain profile. 151 258 IPR002902 -
Trre1g05635 675 FunFam Cysteine-rich receptor-like protein kinase 25 153 258 - -
Trre1g05635 675 CDD STKc_IRAK 351 613 - -
Trre1g05635 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 671 - -
Trre1g05635 675 ProSiteProfiles Gnk2-homologous domain profile. 40 145 IPR002902 -
Trre1g05635 675 Pfam Protein tyrosine and serine/threonine kinase 349 614 IPR001245 GO:0004672|GO:0006468
Trre1g05635 675 ProSiteProfiles Protein kinase domain profile. 345 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05635 675 Gene3D Phosphorylase Kinase; domain 1 306 420 - -
Trre1g05635 675 Pfam Salt stress response/antifungal 167 255 IPR002902 -
Trre1g05635 675 Pfam Salt stress response/antifungal 46 142 IPR002902 -
Trre1g05635 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Trre1g05635 675 SMART serkin_6 345 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05635 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 39 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05635 Trre-Chr1 61683251 61686601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05635 7 675 Receptor kinase-like Gene Family AT4G05200 51.166 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05635 PK_Tyr_Ser-Thr 8.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05635 - - tcc:108662469 745.347