Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05633 ATGGAGTTTCAGAGACACCAAACTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGAAAGCTAGACCAAGATTTTCCCGATGAACGACAGATCTCGGCGCCGCCACCAACCGCCGACGAACGTGCCTCACTTCTCACCGAAGTAGTCAACCAGGTGAACATTCTCGACTCCACTTTCACGTGGAATGAATCGGATCGAGCAGCGGCTAAGCGCGCCACTCATGCTCTCTCCGATCTCGCGAAGAATGAGGAAGTTGTGAACGTGATTGTTGAAGGAGGTGCAATTCCGGCTTTGATTAAGCATCTTCAAGCGCCGCCTGTGAATGATTGTGTTCCGAAGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGAAGTGCTTTCGCGCTAGGACTTCTTGCCGTTAAGCCAGAACATCAGCAGCTAATTGTTGATAGTGGTGCCTTAACACACCTTGTGGATCTATTAAAGAGGCATACAAATGGCTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTCGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTGCATTTGCTTGAATTTTCCGATACAAAGGTGCAAAGAGCAGCTGCCGGTGCGTTGCGAACCCTAGCTTTTAAAAATGACGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTGGGTGTGATCGGAAATCTAGTTCACTCTTCTCCTAATATAAAGAAAGAGGTTCTTTTTGCTGGTGCTTTACAACCAGTTATTGGATTACTTAGCTCCCGCTGCTCTGAAAGTCAGAGGGAAGCAGCATTGTTACTTGGGCAGTTTGCAGCAACTGATTCAGACTGTAAGGTTCACATTGTACAGAGGGGTGCTGTCCGGCCTTTGATAGAGATGCTTTCGTCTCCTGATGTGCAGCTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTACACACAATGGTGGCTTGGTCCCACTGCTCAAGCTTCTTGACTCAAAAAACGGGTCTTTGCAACATAATGCCGCATTTGCTCTTTATGGTCTTGCAGAGAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGAGTTCAGAGACTACAAGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACAGTCGTGTGCTGAACCATCTGTTATATCTCATGCGAGTTTCTGAAAGAGGTTTTCAAAGGCGAATTGCTTTGGTTCTTGCGCATCTTTGTTCTTCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAGCTGCTTATCGGGCTTCTTGGCTCATCTAGCTCCAAGCAGCAACTTGATGGTGCTGTGGCCTTATGCAAGTTGGCCAATAAAGCCTCGGCTCTGTCTCCCATAGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTACTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTGCTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCCAGATATTGCTCAAGACCTACTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTGAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTAGAGAACGTGTCAAGTATGTACGAACTTTCAGAAGCCTTCAATGCAATATCGTTGAGGCACACATGCATTCTTTTTATCTTGGAGCACTTTGATAAGTTGAGCACAAGGCCAGGGCACTCTCTTCTGATTCACCGTATAATACCAGAGATCCGCAACTACTTTGTTAAAGCTCTTACAAATGCCAACCCCCATAGACTGTAA 2115 0.443 MEFQRHQTHCLSERKGQKRKLDQDFPDERQISAPPPTADERASLLTEVVNQVNILDSTFTWNESDRAAAKRATHALSDLAKNEEVVNVIVEGGAIPALIKHLQAPPVNDCVPKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHTNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFSDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSRCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGITHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHSRVLNHLLYLMRVSERGFQRRIALVLAHLCSSDDQRRIFIEHHGLELLIGLLGSSSSKQQLDGAVALCKLANKASALSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTPDIAQDLLRAADQYLLEGLKRLCEYTIAQDILLENVSSMYELSEAFNAISLRHTCILFILEHFDKLSTRPGHSLLIHRIIPEIRNYFVKALTNANPHRL 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05633 704 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Trre1g05633 704 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Trre1g05633 704 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Trre1g05633 704 MobiDBLite consensus disorder prediction 1 27 - -
Trre1g05633 704 SMART BTB_4 539 636 IPR000210 GO:0005515
Trre1g05633 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Trre1g05633 704 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Trre1g05633 704 SUPERFAMILY POZ domain 531 633 IPR011333 -
Trre1g05633 704 Gene3D - 414 521 IPR011989 -
Trre1g05633 704 Gene3D Potassium Channel Kv1.1; Chain A 530 674 IPR011333 -
Trre1g05633 704 SMART arm_5 311 351 IPR000225 GO:0005515
Trre1g05633 704 SMART arm_5 135 183 IPR000225 GO:0005515
Trre1g05633 704 SMART arm_5 352 392 IPR000225 GO:0005515
Trre1g05633 704 SMART arm_5 185 225 IPR000225 GO:0005515
Trre1g05633 704 SMART arm_5 269 309 IPR000225 GO:0005515
Trre1g05633 704 SMART arm_5 227 267 IPR000225 GO:0005515
Trre1g05633 704 SMART arm_5 467 507 IPR000225 GO:0005515
Trre1g05633 704 SMART arm_5 82 134 IPR000225 GO:0005515
Trre1g05633 704 FunFam Armadillo/beta-catenin repeat family protein 530 674 - -
Trre1g05633 704 Gene3D - 44 413 IPR011989 -
Trre1g05633 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Trre1g05633 704 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Trre1g05633 704 SUPERFAMILY ARM repeat 65 409 IPR016024 -
Trre1g05633 704 SUPERFAMILY ARM repeat 434 508 IPR016024 -
Trre1g05633 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Trre1g05633 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 699 IPR044282 -
Trre1g05633 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Trre1g05633 704 MobiDBLite consensus disorder prediction 1 38 - -
Trre1g05633 704 CDD BTB_POZ_ARIA_plant 526 641 - -
Trre1g05633 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Trre1g05633 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05633 Trre-Chr1 61668434 61676941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05633 198 521 U-box Gene Family AT3G46510 25.982 2.96e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre1g05633 BTB 3.2e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05633 - - gmx:100784348 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05633 1 61668434 61676941 Trre1g05633 1 61668434 61676941 ECH
Trre9g00078 9 792766 801194 Trre1g05633 1 61668434 61676941 PCT