Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05610 ATGAATGTTGCTGCAAGTTTTGATGCAGAGAACTCTGAATTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGTAAAGGAGCTTCTAAGACAGTATATAGAGCTTTTGATGAGTATGAAGGAATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGACTTTTTGAAAAATCCTCAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAGCACAAGAACATCATGAAGTTTTACACTTCTTGGGTTGATACTGCCAACAGACACATTAATTTTGTTACTGAGATGTTCACATCTGGGACTCTTAGACAGTACAGACTTAAACATAAAAGAGTTAACATCAGAGCTGTTAAGCATTGGTGCAGACAGATTTTGGAAGGTCTCCTCTATCTCCATAGCCATAATCCACCTGTGATTCATAGAGATCTCAAGTGTGATAATATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGTTCATTGTGTTGGAACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAAGATTACAATGAATTGGTCGACATATACTCTTTTGGAATGTGCATCTTGGAGATGGTCACCTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTGTGGGAAGATGCCAGAAGCTCTAAGCAGAGTAAATGACCCAGAGGTTAAGCAGTTTGTAGAGAAATGCTTAGCAACCGTATCCCTTAGACTTTCAGCAAAGGAACTCTTAGATGACCCTTTTCTCCAAATTGATGATTATGGTTCTGACTTGAAAGAATTTCAGTATTGCTATGAAGTAACACCAACAATTAGACAACCTATGAATGGAAATTATAGCATTAACAATAGCCTAATGAGTGTGTACACTGATAATCTTGGTGGTTATCAAGATGATTTTGACTTCTTTGATTGTGAAGAGGGTGATAATTTGGATGAAGTTGACACCTCAATCAAAGGAAGGAAAAGAGATGATGGCATCTTTCTGAGAATCAGAATACCAGATAAGGAAGGTCGAGTTCGAAACATCTACTTCCCGTTCGACACGGAGACTGATACTGCATTGAGTGTTGCACATGAAATGGTAGCTGAGCTTGACATAACTGACCAAGATGTAACAAAATTAGCAAACATGATAGATAATGAAATTGCGAATTTAGTACCAGGATGGAAAAAGGGACCAAAAATAGATGAAATTTTAGAAGCTTCAAGTGCAAGTTTCTGCCTCAATTGTGCCGCAAAGAATACCTTAGTTGATTATGTATCATCAAATAATCCATGTGCCAAGAATCTTCAATTCTTTCATTGCTCTAAAAATGGATGTGCAGCAGTTCATGGCCGGTTTGAGGAGATCACATACCAATATGAAGGGTCAGCAAACAGCGCTACAGAAAATGCACCAAGTCAACCCAACAGCATTCATTATGCTGATATTTGCGCTCAGAGAGACGAACGCGAGTCAAATCATGAAGAGTTGAAAGATATGCATTGTGACAAATTGCATGAGGTATCAAAACTATTAACCATAAAGGAAGAGGAGAGAAGTGTAAATGTGGATGACCAAAGTGATTTTAATACCAAAAATCCTCCAGCTACCCCTGCAGCACCAGAACGTTTATTATTCTTGGACTATGAAAATGAAATAAGGCAAGAATTGAGATGGCTCAAAGCAAGGTACCAAATGCAGATAAGAGAGATTAGAGACCGTCAAATAGGTAGTACTAGAACAAAATCTATTTGCACATCTCCTGAAACTTTAAAATTAGAACATGGAAAAGATGGATTTCTCATGCTACCAGCTAAATTGTCACACATGAATATACAAAACAATAATAACTCGTTATTGAGGTCTATGGAATACTTTGGCCGACCAAATGATGAGAAATGCAACACTCTGGGCGACCAAATGATTCCAAATTATGTTTGTGAGATGAGTCAGCCTAACAATTCTGAGCAAATGGTCACAGCCAAGGATTTCTTGGCAGGAGCTTTCCTTCCAAACTCGCTTCGAAGGGCAACCTCGCTTCCAGTTGATGCAGTTGATGTCTAG 2145 0.3809 MNVAASFDAENSEFIEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLKNPQDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSHNPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAVHCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVCGKMPEALSRVNDPEVKQFVEKCLATVSLRLSAKELLDDPFLQIDDYGSDLKEFQYCYEVTPTIRQPMNGNYSINNSLMSVYTDNLGGYQDDFDFFDCEEGDNLDEVDTSIKGRKRDDGIFLRIRIPDKEGRVRNIYFPFDTETDTALSVAHEMVAELDITDQDVTKLANMIDNEIANLVPGWKKGPKIDEILEASSASFCLNCAAKNTLVDYVSSNNPCAKNLQFFHCSKNGCAAVHGRFEEITYQYEGSANSATENAPSQPNSIHYADICAQRDERESNHEELKDMHCDKLHEVSKLLTIKEEERSVNVDDQSDFNTKNPPATPAAPERLLFLDYENEIRQELRWLKARYQMQIREIRDRQIGSTRTKSICTSPETLKLEHGKDGFLMLPAKLSHMNIQNNNNSLLRSMEYFGRPNDEKCNTLGDQMIPNYVCEMSQPNNSEQMVTAKDFLAGAFLPNSLRRATSLPVDAVDV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05610 714 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05610 714 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 607 - -
Trre1g05610 714 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05610 714 Gene3D - 358 443 - -
Trre1g05610 714 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Trre1g05610 714 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Trre1g05610 714 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05610 714 CDD STKc_WNK 22 281 - -
Trre1g05610 714 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Trre1g05610 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Trre1g05610 714 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 361 415 IPR024678 GO:0004674|GO:0005524
Trre1g05610 714 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Trre1g05610 714 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05610 Trre-Chr1 61449386 61453079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05610 1 517 MAP Kinase Kinase Kinase AT3G22420 56.429 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre1g05610 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05610 K08867 - gmx:100804179 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05610 1 61449386 61453079 Trre1g05610 1 61449386 61453079 ECH