Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05608 ATGGAACCGACTGCGAGAATAGCTAGCCCTTCTGGGGTTGTGGTTAAGAATAGAAGTTCTTCTGGGTGTTTGATTGTTAGAAAGAAAGGGGATGGTTTGGGTGGTGGAGTTGGTGGTGGTTCAAGTTCCCGGAAGCAGTATGAATCGAAGAAGGTGAGGAAAAAGCCGAAGGCAGATTCGAGTGATTCGGAATCAAGCGGGGAGTTACTTCTGCCGTCTGCTAGGAGGATTGGCCCCGAGACCATTCGAGTTTGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGTAATGTTGGCAGTGGTGAAATTAGTAGGAAGAGGGGGAGAATGGAGCAAATTAGGCGTAATGGGGATGGCATGGTTGAGGGGAATGGCTTGGAGAGAAGGGATAAGAAAGTTAAGTTGGATGTGTTTGATTTTGATGAATACGATGTAGTGGGTGCGGAAAGGATGAGAAGGAGGCAATTTGATAATGACGGGGTTGGTTTAGGAGGAGGAAGGTTTATGGGAACAATGCATTCTGGTAGAGGTAGCATTGGTAGGGAATTTGAAACTGGTTCAAGCAAACGCATTGTGGATAAGAGAAAAAATTCCTATTATGACAAGGCAAGTGGTTTGCATCTTGGAGATAGTGCTGACCACAGTCGGATAAAGATGAAAAAGGATGGAACTCAGCGTCCTCTACCCTTGATGAAGGAGAAGTTTACCTCTGACGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGGTGGGTGGGTTAGCAGAACACTATGATCATCGAAAATCAGTAGAAACCAGACAAAGTTTAAGGGCCGAGGGCACCTCTAAGAGGAATGTTCCAATCCGTCCTTCATCACACTTAGAAACAAAATCTGCTGAGAAACAGGGTTTACTTGTTAGGCCAGAGAAGAAACAGATAACAAAAAAATCGTTGTCAAGTAAGGAGGACAGTGAGGGTGATGAACAGGATTCAGATAACAATGACACATCAATGAATCTAGAAGTAAAAAACATTAAAGCTCACACATCTTCAAAAAAGATAACCTCTGAAAATGAACAGACTCCCGTACATGACAAGCTCCCAACTACAAAATCGAGTGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTACGAGAACAAATACGTGAGATGCTTCTGAATAAAGGCTGGACCATAGACTATCGCCCACGACGGAATAGAGACTATTTAGATGCAGTTTACATTAATCCTGCTGGAACAGCTTATTGGTCCATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGATTGAGGATGATCAACAGGCCAAGGCCAAAGGGGAGAGTTCTTCTTTTGCTCCTATTGCTGATGATGTGCTCAGTCAATTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGATTTGAAGATGAAGAAGAAGAAGCAAAGAGTTGATGACGGTGATGGTGGAAAAGAACGGCAGATTAAAAGAATTGCTGGCAAAAAGCACCATATGAGTGGGATTGATAGTGATAGCAATGAAGATAAGTTAAGCTCCTTTGTCAAGCAAGGAAGTAAATCAATGAAAACAAAATTGACTGAAAATGCTGTTACCGGTGGTAGCTCTAAAAGCCAGAATGTTACAGCTGAAAAATCAATCTCTGAAAGTGATCCTCAGGTCCTACTTGGAAGGAAAAGTAGAAAACATGGACGGTGCACTTTATTAGTTCGTAGTTCTAACAAAGGATTGAATTCAGAATCAGATGACTTTGTTCCATATACGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGTAGTACAAGTTAGTCAAAAGGTTCAATATCGCAGGCGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGCGGTTGTTGTAGTAAGATCCTCACGGTTTCAAAGTTTGAGCTTCATGCAGGAATCAAATTGCCACAGCCATATCAAAACATATATTTAGATTCTGGAGTTTCCCTTCTACAATGCCAAATAGATGCGTGGGGAAAACAAGAGAATTTTGGAAAAATCAGTTTCCATTCAGTAGATGTCGATGGTAATGATCCAAATGATGATACATGTGGTATATGTGGAGATGGAGGGGATTTAATCTGCTGTGATGGGTGTCCATCAACATTTCATCAGAGTTGCCTGGATATACAGATGCTTCCCCCAGGGGAATGGCGTTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAATGGAACTATTGACAAAGAAGACAATGCAACTGTATATGCCCTACGTACTTGTGACTTATGCGAGAAAAAATATCATGACTCCTGTACTAAGGATATGGGTGTCCTTCTTGCCGACTCCAATATGTCAGGGCCTTCCTTTTGTGGAAAAAGCTGCAAAGAGCTTTTTGAGCAATTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACTTGGTGTCTTGTTCGTAGAACAGATGATGATTCTGAGGCAGCTAGTAGGGGAGTCACCCAGAGGGTGGAATGCAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGAATCAATATAATCCATAATAGTTTATATAATAGCGGGTCAAACTTCAGTCGGTTGAATTATACTGGCTTTTATACTGCTATTTTGGAGCGGGGTGATGAAATAATTTCTGCTGCATCTATCAGGTTCCATGGTACTAAGTTAGCAGAGATGCCATTCATTGGAACTCGACATATATATAGGCATCAGGGAATGTGCCGCCGTCTTTTTTCTGCCATTGAACTTGCACTTTGCTCTCTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTTGTTCTTACGTGGACAACAGTATTTGGCTTCACACATCTTGAGGAACCACTCAGGCAAGAAATGCGGTCATTGAATATGTTGGTGTTCCCTGGTATTGATATGTTACAGAAGCTTCTAGCGGAGCATGGAAAACTTGAGGATGCCGAGCAATTTGAGAATGAAGATGTTTCAATCAAGCCCACTGTGGTCAGTAGGTTAGATATCAATTCACTGGCCTTGCAAGATCCTCATGGAAGTGAGGATGCTAGTTCCAATCCTGCCAATAAGAATAACAATGAAAGCAGTGATGCTTCTCAAGATACAAGCAATCAGGGTTTGACTGGCAGGACTGTGTGCTCCAAATCTCATTATGAGGAAAAATCATCTGAGGATGCCAGTTCCAATCCAGCCAATAAGATTAACAATGAAAGCAGTGATGCTTCTCAAGATACAAGCAATCAAGATTTGACTGGCAGGACTGTGTGCTCCAAATCTCATTCTGAGGAAAAATTATCTGATTCTGTTTCAGAGAATTGTACTTCTCTTTCTAATTCTAGTCACGGGGTACTCGAAAAGAAAAATAAAATATTGATGTCTTCTCCTGTCAACGATCCATCATCCAAATGCCAACTCATCTCACCAAATGACATTTCTACAAATGGTCTTCCATCAGATCACTCGGATTGTCATGAAATTCCAGCTTCGGGTCAAGCAACTGCATGTTCTGACCTAGGTACGGTAAAAAACCTGGTTGAACCTGTTTCTCACGGGAAACCTCATGCTTTCACTGATATGAATTGTGATTCACCAGAGCTTGACCGAAACCCTGTGTCGGATTCTCGAGTGGCGGATAATGCTTTGTCTTCTAAAGAGTTAGATATGAATGATGCCCATGTTGAGGTTCTTGAAGCCGGCCCCTTAGTGAATTCGTCTCAGGGGAACAATACCAAGGAGAGTAATGAAGATGTAGATGTCTCTGGTTCTATTCTTAATCATGCTGGTGAGAGTTCCTTGCAGGTAAGATCTGATTTGAATGGTGAAATAGCATACGAGGGGGAAAAGAATTCTCATTTGGACACAGAAGTTGCTTCAAATGAAATGCATTTGGATGAAACTGGCCTAAATGCTTCTGGTGATACTACTGAGACTGATCCAGCATTGAATGGTTGA 4059 0.4228 MEPTARIASPSGVVVKNRSSSGCLIVRKKGDGLGGGVGGGSSSRKQYESKKVRKKPKADSSDSESSGELLLPSARRIGPETIRVCNSLSALERGGNVGSGEISRKRGRMEQIRRNGDGMVEGNGLERRDKKVKLDVFDFDEYDVVGAERMRRRQFDNDGVGLGGGRFMGTMHSGRGSIGREFETGSSKRIVDKRKNSYYDKASGLHLGDSADHSRIKMKKDGTQRPLPLMKEKFTSDESIRVQGKNGVLKVMVNKKVGGLAEHYDHRKSVETRQSLRAEGTSKRNVPIRPSSHLETKSAEKQGLLVRPEKKQITKKSLSSKEDSEGDEQDSDNNDTSMNLEVKNIKAHTSSKKITSENEQTPVHDKLPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLIEDDQQAKAKGESSSFAPIADDVLSQLTRKTRKKMEKDLKMKKKKQRVDDGDGGKERQIKRIAGKKHHMSGIDSDSNEDKLSSFVKQGSKSMKTKLTENAVTGGSSKSQNVTAEKSISESDPQVLLGRKSRKHGRCTLLVRSSNKGLNSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFELHAGIKLPQPYQNIYLDSGVSLLQCQIDAWGKQENFGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCPNCTCKFCGLANGTIDKEDNATVYALRTCDLCEKKYHDSCTKDMGVLLADSNMSGPSFCGKSCKELFEQLKKYLGTKHELDAGFTWCLVRRTDDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINIIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELALCSLKVEKLVIPAISELVLTWTTVFGFTHLEEPLRQEMRSLNMLVFPGIDMLQKLLAEHGKLEDAEQFENEDVSIKPTVVSRLDINSLALQDPHGSEDASSNPANKNNNESSDASQDTSNQGLTGRTVCSKSHYEEKSSEDASSNPANKINNESSDASQDTSNQDLTGRTVCSKSHSEEKLSDSVSENCTSLSNSSHGVLEKKNKILMSSPVNDPSSKCQLISPNDISTNGLPSDHSDCHEIPASGQATACSDLGTVKNLVEPVSHGKPHAFTDMNCDSPELDRNPVSDSRVADNALSSKELDMNDAHVEVLEAGPLVNSSQGNNTKESNEDVDVSGSILNHAGESSLQVRSDLNGEIAYEGEKNSHLDTEVASNEMHLDETGLNASGDTTETDPALNG 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05608 1352 MobiDBLite consensus disorder prediction 273 387 - -
Trre1g05608 1352 Pfam Tify domain binding domain 631 681 IPR032308 -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g05608 1352 Pfam PHD-finger 709 751 IPR019787 -
Trre1g05608 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 788 IPR013083 -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 1046 1081 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 472 562 - -
Trre1g05608 1352 CDD PHD2_CHD_II 709 748 - -
Trre1g05608 1352 SUPERFAMILY FYVE/PHD zinc finger 698 754 IPR011011 -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 1044 1151 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 1096 1124 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 1326 1352 - -
Trre1g05608 1352 ProSiteProfiles Zinc finger PHD-type profile. 706 751 IPR019787 -
Trre1g05608 1352 ProSitePatterns Zinc finger PHD-type signature. 709 748 IPR019786 -
Trre1g05608 1352 PANTHER PHD FINGER PROTEIN 12 343 1152 IPR042163 GO:0003714|GO:0045892
Trre1g05608 1352 MobiDBLite consensus disorder prediction 1137 1151 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 294 324 - -
Trre1g05608 1352 SMART PHD_3 708 749 IPR001965 -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 516 559 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 482 499 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 354 368 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 1333 1352 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 25 74 - -
Trre1g05608 1352 MobiDBLite consensus disorder prediction 369 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05608 Trre-Chr1 61434668 61441805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05608 12 1046 PHD Transcription Factor Family AT4G14920 48.826 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre1g05608 TDBD 9.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05608 - - mtr:25485216 2085.84