Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05596 ATGGAGGGTCGACCAGACATTCCCAATCCATCGTTTATGAACATAGCTTCTGGGATGCAAGCAGATGTAGGAGAAGAAACTGTGGGCACAAACATATCAAATGGGGGACCAAGCTATGGTGTTGGGGGTAGTTCAATCCCATATGAAATTTTAAATGGGTCATGTAATTCGTTGTTCAACGATGAAGATGAAGAAAGTTCTGGTAATGGTTCTGGTTCTGGTAGTGGTTCTGGTTCTGGTAATGAAGTAGATGTAATTATAATAAAAGATATGGCTGATATAATGAAGATTGACTTACAAAATTTTCGTGTAGCGGATGTGCGGAAGTATGAATTTGTTGGGTTGGATGTTGCATACAATTTTTATTGTTGGTTTGCCAAATTTTCTGGGTTCTCTGTTCGCAAAGGTCAAGTGCTTAAAAATCGTGACGGGAACATTCTACAACAAACATTTTTATGTTCATGTGCTGGTTTTAGAGAGGATAGAGGGTTAAGTTTGGAGAAACGAAAGCGTGAGGCAAAGAATGAAACAAGATGTGGGTGCTATGCAAGATTTAGAGTTCACATAGACCTTGTGTCTCTGCGATGGTATGTAACTTTACTTGAAATTGATCACAATCATGAGTTGCTAGGTGGTACAATGTGTGGCTTCCTACCAGCACATAGAAAAATGAGTCAAAGTGATATAGATGAAATTGAACGAAGCCGAAAAGCGGGGATACGGCCATACCAAGTTTACGGTTCGATGGCTAATACAGCTGGTGGTTTTGACAAGGTAGGCTTTGTTAAAAAGGATATCTATAACCAAATTGGTAGACAAAAGAGACAACTTTATTCTGATGCATGTGGTGCAGTGAAGTATCTTGAAGACCTTTGCACAAAAGACCCACTAATGTTTGTGGCACACTCGATTGACAAAGAAAGAAAGCTTGAGCGATTATTTTGGAGTGACGGGGAGAGTCGAATGAACTATGAGATTTTTGGAGATGTTTTGGCATTTGATGCGACATATAGGAAAAACAAATACAACTGTCCATTCGTTGTATTTTCTGGGGTTAATCACCATAACCAGACCATAGTTTTTGCCACAGGTATTGTGACACGAGAGACTGAAGACACATATGTGTGGTTGCTGGAACAATTGTTGATAGCCATGAAAGGTAAGCATCCATTGTCTGTAATTACTGATGGAGACACTGCAATGAAAAATGCTATCAAAAGAATTTTCCCTAAAGCTCATCACAGATTGTGCGCGTGGCATCTGTTAAGGAACGTGTCGTCCAACATTGGCATTGCAGATGTTATGTCTCATATTAAAAGATGCATGTTGTGCGACATGGAAGTTGGTAAATTTGAAATTTTATGGGATCAGATGGTTATATAA 1383 0.3926 MEGRPDIPNPSFMNIASGMQADVGEETVGTNISNGGPSYGVGGSSIPYEILNGSCNSLFNDEDEESSGNGSGSGSGSGSGNEVDVIIIKDMADIMKIDLQNFRVADVRKYEFVGLDVAYNFYCWFAKFSGFSVRKGQVLKNRDGNILQQTFLCSCAGFREDRGLSLEKRKREAKNETRCGCYARFRVHIDLVSLRWYVTLLEIDHNHELLGGTMCGFLPAHRKMSQSDIDEIERSRKAGIRPYQVYGSMANTAGGFDKVGFVKKDIYNQIGRQKRQLYSDACGAVKYLEDLCTKDPLMFVAHSIDKERKLERLFWSDGESRMNYEIFGDVLAFDATYRKNKYNCPFVVFSGVNHHNQTIVFATGIVTRETEDTYVWLLEQLLIAMKGKHPLSVITDGDTAMKNAIKRIFPKAHHRLCAWHLLRNVSSNIGIADVMSHIKRCMLCDMEVGKFEILWDQMVI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05596 460 Pfam MULE transposase domain 330 424 IPR018289 -
Trre1g05596 460 Pfam FAR1 DNA-binding domain 120 210 IPR004330 -
Trre1g05596 460 PANTHER OS01G0519700 PROTEIN 111 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05596 Trre-Chr1 61307969 61309446 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre1g05596 MULE 1.4e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05596 - - tpra:123884554 608.986