Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05589 ATGTTTCTCATTGTCTTAACTTGTGTCACAATCTATGTTTTTCTTCGTTCATTCTTAGCAATCATCAAAAAACCAAACTATAAGCTTCCACCAGGACCTACCCCTCTTCCCATCATAGGGAACCTTCTAGAATTAGGTGAAAAGCCTCACAAATCATTGGCAAAACTTGCAAAGATTCATGGTCCTATAATGAGTCTCAAGCTTGGTCAAGTAACCACTATTGCCATCTCCTCAGCAGATATGGCAAAACAAGTTCTTCTAACCAATGATCAGTTCTTGTCAAACAGACCTATTCCCCAATCTGTGTCCGTTCTCAACCACGAGCACTTTAGTCTTGCATTCATACCGGTTTCACCTCTTTGGAAGGAATTGAGAAAAATATGCAACACTCAATTATTTTCTCACAAGACTCTTGATGCCAGCCAAGACGTTAGGTGCAAAAAAATGCAGCAGTTCCTCGCAGATATCGATCAAAGCAGTCAAATCGGTGAAGCTGTAGATATTGGAACAGCGGTTTTTAAGACTACCATAAATTTGTTATCAAACACTATTTTCTCTGTGGATTTGATTCAGTCTAATGGTGAAGCCGGCGAGTTCAAGGACTTGGTGACTAATATTACAAAACTTGTTGGCTCACCAAATGTGGCAGATTTTTTCCCTATATTGAAGATGGTTGATCCGCAAGGCGTCAAAAGAAAACAAGCAAAGAATGTAAAGAAAGTGTTGGACATCTTTGAAGACTTGGTTAACCAACGTTTGAAGACGAGGGAAGGCTCATGCTTAGACACCAACAAAGACATGTTAGATGCCATGCTCAACATTTCTAAGGATAATGAGTTTATGGACAAAAATATGATCCTACATCTAGCACATGATCTATTTGTTGCGGGAACAGATACAACTGCATCTACTCTCGAATGGGCCATGACAGAGGTTGTCTGCAACCCAGAAATTATGCTGAAGGCCAAAAGTGAGTTAGAACAAATGATTGGTAGTGGTGTCCTAATCGAGGAGTCAGATATCGCTAAGCTCCCATACTTACAAGCAATCATAAAAGAGACACTTCGGTTGCACCCGCCGGTGCCATTTTTACTACCACGAAAAGCTGAGAGGAATGTTGACATAGGTGGCTACACTATCCCGAAGGATGCACAAGTGCTAGTTAATGTCTGGAATATTGGCAGAGATCCCACTATATGGGTGAATCCAACTTTGTTCTCACCAGAAAGGTTCTTGGGATCAGACATTGATGTCAAAGGTCGGAATTTTGAGCTTGCACCATTTGGTAGCGGACGACGAATATGCCCTGGCTTACAACTAGCTAATAGGATGCTGCTACTAATGTTGGGGTCACTTGTCAACTCTTTCGATTGGAAGCTTGAAGGTGACATGAAACCAGAAGATATGGATATGGATGATAAATTCGGCATTACCTTGCAAAAGGCACAACCCCTTCGAGCTGTTCCTGTAAGAATAAGCAAATAA 1485 0.4121 MFLIVLTCVTIYVFLRSFLAIIKKPNYKLPPGPTPLPIIGNLLELGEKPHKSLAKLAKIHGPIMSLKLGQVTTIAISSADMAKQVLLTNDQFLSNRPIPQSVSVLNHEHFSLAFIPVSPLWKELRKICNTQLFSHKTLDASQDVRCKKMQQFLADIDQSSQIGEAVDIGTAVFKTTINLLSNTIFSVDLIQSNGEAGEFKDLVTNITKLVGSPNVADFFPILKMVDPQGVKRKQAKNVKKVLDIFEDLVNQRLKTREGSCLDTNKDMLDAMLNISKDNEFMDKNMILHLAHDLFVAGTDTTASTLEWAMTEVVCNPEIMLKAKSELEQMIGSGVLIEESDIAKLPYLQAIIKETLRLHPPVPFLLPRKAERNVDIGGYTIPKDAQVLVNVWNIGRDPTIWVNPTLFSPERFLGSDIDVKGRNFELAPFGSGRRICPGLQLANRMLLLMLGSLVNSFDWKLEGDMKPEDMDMDDKFGITLQKAQPLRAVPVRISK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05589 494 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 5 491 - -
Trre1g05589 494 SUPERFAMILY Cytochrome P450 30 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 FunFam Cytochrome P450 76C4 21 488 - -
Trre1g05589 494 Pfam Cytochrome P450 30 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 Gene3D Cytochrome P450 21 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05589 494 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Trre1g05589 494 CDD CYP76-like 57 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05589 Trre-Chr1 61243764 61245349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05589 3 491 Cytochrome P450 AT2G45550 44.980 2.86e-159 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05589 - - gmx:100807367 743.806