Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05585 ATGCCAAGTCTATTCTCTAAACAACTATACCTCTGTTTCTTCAAGCTCAAATATCCCACAATTCTCTCCCAATCTCACCCACAACACACTACTACTCCATCACAATCACAATCACCACCTTACACTTTCCACCATTTTAACACCACCTTCACCCACCACCGCGACGAAGCCGAAGACTATTTCTCCGACGACACCACGGAACTTCCACCACCGGACTTCGCCTCCGCTTTCGCTTCTCAGAGATTCTTCTTCTCTTCCCCTGGAAGCTCCAAATCCATCACAGAAACAGAGTCTCCTCTCAACAACACTCAACCCTGCAAATCATTGATACCGAAAGGAGGTAGTGTGAAGAGGGTACCAAAATACTCTGTAAACCCTTATGATGATTTCCTCTGTTCTATGCAGGAAATGATTCAATCTCAACAACAAGTGTTTGATGTTACTAATGATTGGGATTATCTTCATGAGCTTCTCTTATGCTATCTTGCTCTTAATCCTACACATACTCATAAATATATTGTGCAGGCTTTCACTCACCTCCTTGTTGATATTTTATCTTCATCCTCCTCTTCATCATTCTCCTCTTTGTCGCAACCGGCGTCACCACCTTCTCGGAAGCTCAATAGCCAACGCGGCCCCGGTAGTTTCTCAGGGAGGTTACTCTAA 666 0.4429 MPSLFSKQLYLCFFKLKYPTILSQSHPQHTTTPSQSQSPPYTFHHFNTTFTHHRDEAEDYFSDDTTELPPPDFASAFASQRFFFSSPGSSKSITETESPLNNTQPCKSLIPKGGSVKRVPKYSVNPYDDFLCSMQEMIQSQQQVFDVTNDWDYLHELLLCYLALNPTHTHKYIVQAFTHLLVDILSSSSSSSFSSLSQPASPPSRKLNSQRGPGSFSGRLL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05585 221 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 38 187 IPR038933 GO:0045892
Trre1g05585 221 MobiDBLite consensus disorder prediction 193 221 - -
Trre1g05585 221 MobiDBLite consensus disorder prediction 193 215 - -
Trre1g05585 221 Pfam Transcriptional repressor, ovate 123 184 IPR006458 -
Trre1g05585 221 ProSiteProfiles OVATE domain profile. 119 183 IPR006458 -
Trre1g05585 221 NCBIfam uncharacterized plant-specific domain TIGR01568 121 185 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05585 Trre-Chr1 61218582 61219247 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trre1g05585 Ovate 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05585 - - mtr:25485200 293.508