Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05580 ATGGAGTCTGACGGAAACTCTGACAATGGCGGTGGAAACAAAAACTTTTCAAATCTTGCGCCGGTGGCGCCGGAAGAAGCTGGCGAAGGTTTACCTTATGCGCCGGAAAATTTTCCAAATCCAGGTGACATTTGGCGATGGAAAGCTGGTAAGAGGATTTCGAATAACGGTAATTTTCGTGACCGTTATTTATATCTTCCTCGTCGTCTTTCTGCCCCTGCTAATCGGACTTCTTTCCGCGGCGGATTTGCTAGCAAACTTGCCGTTGAACGCTATGTCAGAGAAAAGTTCCCTAAAGCTAATATTTCTGATTTCTTCGCTTCATTCAGCTGGAGAATTCCTTCTGGTCTTCCAGGCAATATGAATCCTTCAGTTGATGAACTTAAACAGTTTGAATTAGAAGAACAGGGAGAACCCGATGTTCCCGGTGACATTGATGGATGCAAAGCTGGGAATCAGAAGTGCAGCAGCTTGGTTTTGGAAAAAGAATATCCATCTGTCATGCCGTGTGATTTCTGTTGTGCTGAGCCTAAATTTTGTCGTGAATGTTGCTGCATTCTTTGTTACAAAGCCGTTGATTCAAGTCATGGTGGCTATAGCTATATTATGTGCAAAGTAAAACACGATGATGCTATTTGTGGGCATGTCGCTCATCTGGAATGTGCTTTTCGAGCTTACATGGCCGGCACCTTGGGGGGAATGATAGGATTGGATGCTGAATATTTTTGCCGGCGCTGTAATGGGAGGACTGAACTGATTTCTCATGTTTATAAGCTTCTACTGACAAGCGAAACTATTGATTCAGATGATGTGAAGGAAAAAATGTTAAATCTTGGCATTAATCTCTTACACGGTTCAGAGAAAGTCGCAGCAAAGGAGATTATGAGTCGAATTATATTGGCCATGTCAAAGCTTAAATGTGGGACTAATACTGAAGATATCTTGAATGTTGGTGACAAAGTTACAACTCATTCTTCAGGTTCCTCTAATAATGGCGAGGCTGCTACAGAAGATGAAAGCACTTTAAACCCTTCAAATGTTGTAAATTGGACAAAAGAATTTCGGTATGGATCCGAGGTGTTAAAACTTAAGGGTGACGTTGATCAGGGTCTGGAGGCTCTTAGAAAGTCACAGAAGTATGAATATAAGTTAGCAGAAGAAAACCTTAGGGCACATGTGAGATATTTACAAAATCTTCTTCAGCAACTGAACACAGAGAAGTCTGAATTAGCATGTCAACCGAACACATCTCCTTCAAGTGTCTTGTTTCAAACTGTCGAGAAACGAAAGGAACAGCTAAGGCAGGCAATGATTAAATACGAAGAAATGAAGAAGGTAGCAAATGGTTTTGGCTGTACACCCAAAAATATTTTAGAGAAACACTTTGGTCTATAA 1395 0.4129 MESDGNSDNGGGNKNFSNLAPVAPEEAGEGLPYAPENFPNPGDIWRWKAGKRISNNGNFRDRYLYLPRRLSAPANRTSFRGGFASKLAVERYVREKFPKANISDFFASFSWRIPSGLPGNMNPSVDELKQFELEEQGEPDVPGDIDGCKAGNQKCSSLVLEKEYPSVMPCDFCCAEPKFCRECCCILCYKAVDSSHGGYSYIMCKVKHDDAICGHVAHLECAFRAYMAGTLGGMIGLDAEYFCRRCNGRTELISHVYKLLLTSETIDSDDVKEKMLNLGINLLHGSEKVAAKEIMSRIILAMSKLKCGTNTEDILNVGDKVTTHSSGSSNNGEAATEDESTLNPSNVVNWTKEFRYGSEVLKLKGDVDQGLEALRKSQKYEYKLAEENLRAHVRYLQNLLQQLNTEKSELACQPNTSPSSVLFQTVEKRKEQLRQAMIKYEEMKKVANGFGCTPKNILEKHFGL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05580 464 MobiDBLite consensus disorder prediction 320 342 - -
Trre1g05580 464 Coils Coil 386 413 - -
Trre1g05580 464 Pfam PHD - plant homeodomain finger protein 151 280 IPR032881 -
Trre1g05580 464 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 7 464 - -
Trre1g05580 464 MobiDBLite consensus disorder prediction 1 16 - -
Trre1g05580 464 Coils Coil 423 446 - -
Trre1g05580 464 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05580 Trre-Chr1 61178582 61180752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05580 176 302 PHD Gene Family AT3G24440 25.954 2.20e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05580 - - psat:127092568 610.912