Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05577 ATGCCGTGTGATTTCTGTTGTGCTGAGCCTAAATTTTGTCGTGAATGTTGCTGCATTTTTTGTTACAAAGCCGTTGATTCATCTCATGGTGGCTATAGCTATATCATGTGCAAAGTAAAACACGATGATGCTATTTGTGGGCATATCGCTCATCTGGAATGTGCTTTTCGATCTCACACGGCCGGCACCTTGGGGGGAATGATAGGATTGAATGCTGAATATTTTTGCCGGCGTTGTAATGGGAGGACTGAACTGATTTCTCATGTTCATAAGCTTCTACTGACAAGCGAAACTATTGATTCAGATGATGTGAAGGAAAAAATGTTAAATCTTGGCATTAATCTCTTACACGGTTCAGAGAAAGTTGCAGCAAAGGAGATTATGAGTCGAATTACATTGGCCATGTCAAAGCTTAAATGTGGGACTAATACTGAAGATATCTTGAATGTTGGTGAAAAAGTTACAGCTCATTCTTCAGATTCCTCTAATAATGGCAAGGCTGCTGCGGAAGATGAAAGCCATTTAAACCATTTTCCGTTTCAAGCTGAGATATTAAAACTTGAATCTAAGATTGATCAGGGTCTGAAGGATCTAAGAAAGTTACACAAGCTGCAATATCAGTTGGCAGAAGAAAAGCTTACGGCACATGTGAAATATTTACAAAATCTTTTGCAGCAACTGAACAGAGAGGAAGACGAATTAGCAAGTCAACCGGACGCATCTCATGCAAGTGAATTGTTTCAAACTGTCGAGAAACGAAAGGACGAGCTAAGACAGGGAATGATTAAATTCGAAGAAATGAAGCAGATTGCAAATGGTTTTTCCAGAACACCTAAAACTATTTTAGAGAAACACTTTGGCTTATGA 867 0.391 MPCDFCCAEPKFCRECCCIFCYKAVDSSHGGYSYIMCKVKHDDAICGHIAHLECAFRSHTAGTLGGMIGLNAEYFCRRCNGRTELISHVHKLLLTSETIDSDDVKEKMLNLGINLLHGSEKVAAKEIMSRITLAMSKLKCGTNTEDILNVGEKVTAHSSDSSNNGKAAAEDESHLNHFPFQAEILKLESKIDQGLKDLRKLHKLQYQLAEEKLTAHVKYLQNLLQQLNREEDELASQPDASHASELFQTVEKRKDELRQGMIKFEEMKQIANGFSRTPKTILEKHFGL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05577 288 Pfam PHD - plant homeodomain finger protein 1 113 IPR032881 -
Trre1g05577 288 Coils Coil 210 237 - -
Trre1g05577 288 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05577 Trre-Chr1 61167409 61169456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05577 9 135 PHD Gene Family AT3G24440 25.191 1.19e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05577 - - psat:127092568 353.214