Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05566 ATGTTCTCTTTCCCTAATAATTTCCTTTCATCTTCTTCTTCTCCTTCTTCTTTATCTTACCCTAATAATACCCTTTCTTCTTTTCTTGAAAATGATTTTCCAAATAACAACACTACTCTACTTGATCATCAACCACCAATACTAACACATCATGATAATATTGTTCCATTATTCCATGATCATAACAACCATCATGATGTTTCAAATTTTTCAGATTGTAATAATAACATTGGAATGTTTGAACAAGATACTTCAAACTTTGCTAGTATTCTTCAAATTCCAAATTTTGTTGTGACAGAACAAAAACAATTACCAACAACAGTGATTAATGGAGGTAAAAAAGATAGACACAGCAAGATTCACACTTCACAAGGTTTAAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCTAGAAAATTCTTTGATCTTCAAGATATGTTAGAGTTTGATAAACCTAGTAACACACTTGAGTGGCTTTTCACTCAATCTGACACTGCAATCAAAGAACTTGCTAGAACTAAAAACGGCGGCGGCTACAACGGCTACAACGACAATAAGGCTTTGCTTGATTCAAATAGCAACAAATCATTTTCCTCCGGCGGCGGTGGTGGTGGTGACGGTTGTTCTTCGAAAGGAAGAAAATTGAAATGGACACAAAAAGAAGAAACAAAAAAGGAATCAAGAGAAAGAGCTAGAGCAAGAGCAAGAGAAAGAACTTGTTACAAGATGTGTAGTAGTGGAAGAATTCAAGAAGAAATTAGGTATCCAACAACAACAGATTCAACAACTAATCAACAAATGTTACTTCAACAATTGATGTCATCAACATCATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAAACCTATAATAACAACTCTTCACTTCATAATCATAATCATAATCATCATAATCACTTATTGGATAGTGAAATAGCTAGAGATCATGGTGGATTTAATGTCATTGAAGAATCTATTATGATTAAAAGGAACATGATCTACTATGAATCTATCTACATGCTTCATGAATCAGTGAGGTTGGAAAGTATTGGGAGGAGAGAAAGAATCAGAGGCAACACTAATTTGCTAGTTTTCGCTTTATATTCCCATTTTACAATGTTTTTTGTATTGATTCATGATGATAACCAGCCAATGGCATATGAAAGTTTTCATAAAGTAAGGAAGGAATGTCATTGGAGGTGGAAGAAATCTTGTGCAAATTTGATTATATGCCCTTCCTCTGCAAACTGGTTTCTGTTTGAGTTTTGA 1302 0.3425 MFSFPNNFLSSSSSPSSLSYPNNTLSSFLENDFPNNNTTLLDHQPPILTHHDNIVPLFHDHNNHHDVSNFSDCNNNIGMFEQDTSNFASILQIPNFVVTEQKQLPTTVINGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTQSDTAIKELARTKNGGGYNGYNDNKALLDSNSNKSFSSGGGGGGDGCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRIQEEIRYPTTTDSTTNQQMLLQQLMSSTSSPVDSTETEAYARWRQLLQLQTYNNNSSLHNHNHNHHNHLLDSEIARDHGGFNVIEESIMIKRNMIYYESIYMLHESVRLESIGRRERIRGNTNLLVFALYSHFTMFFVLIHDDNQPMAYESFHKVRKECHWRWKKSCANLIICPSSANWFLFEF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05566 433 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g05566 433 MobiDBLite consensus disorder prediction 194 235 - -
Trre1g05566 433 MobiDBLite consensus disorder prediction 214 235 - -
Trre1g05566 433 Pfam TCP family transcription factor 112 246 IPR017887 -
Trre1g05566 433 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 110 321 IPR005333 GO:0003700
Trre1g05566 433 MobiDBLite consensus disorder prediction 112 127 - -
Trre1g05566 433 ProSiteProfiles R domain profile. 226 243 IPR017888 -
Trre1g05566 433 ProSiteProfiles TCP domain profile. 113 171 IPR017887 -
Trre1g05566 433 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05566 Trre-Chr1 61058237 61062209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05566 113 257 TCP Transcription Factor Family AT1G67260 41.317 6.13e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre1g05566 TCP 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05566 - - psat:127091957 343.584