Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05563 ATGCAATCAGAAGCTGGGGGTCCTAGTTCCCCTAACATGGGGTTGGAAGGTGGAGCTGGGAATTCAAGGATGAATGGTAGTGGAAATCGAAGCGCCAAAGATATGATTTTCAGAGCTGATAAGATTGATTTGAAGAGCTTGGATGCCGAGCTAGAAAGGCACTTGAGCAAGGCTTACTCTAGAAACGCCGAGAAAAATAGGCGTAAAGAAGAGTGGGAGATTGATTTGGCCAAATTGGATTTACGTTATGTTGTTGCGAACGGAGCTTATGGAACTGTCTACAGGGGAACTTATGACAATCAAGATGTTGCTGTGAAAGTGTTGGACTGGGGGGAGGATGGTGTTGCCACTGCAGCTGAAATTGCTGGCTTACGAGCAGCATTTCGGCAGGAGGTTACTGTGTGGCAAAAACTTGATCATGCAAATGTCACAAAATTTATTGGAGCTTCAATGGGAACTTCGAATCTTAAGATTCCTCCTTCAGATGCTGGCGGTCAAGATAACCTTCCTTCCAAGGCGTGTTGTGTTGTTGTCGAGTTTGTTCATGGTGGGACATTGAAACAATTGTTGTTGAAAAATAGGCGTACGAAACTCCCATACAAGGTTGTGATTCAGCTGGCTTTGGACCTCGCTAAAGGTCTTAGTTATCTACATTCGAGGAAAATTGTTCACCGCGATGTGAAAACTGATAACATGCTGCTGGACGAAAACCAAAACTTGAAAATAGCTGATTTTGGTGTTGCTCGGGTTGAAGCTGTAAATCCAAGTGAAATGACTGGTGATACCGGAACCGTTGGATATATGGCGCCAGAGGTTATAAATGGTAAGCCTTACAACAGAAGCTGTGATGTCTACAGCTTTGGCATTTGCTTATGGGAAATTTATTGCTGTGACATGCCTTATCTGAATCTAAGCTTTGCTGACGCGTCAGCTGCAGTCGCTAATCGGAATTTGCGACCAGAAATTCCTAGATGCTGCCCAAGTGCCTTAGCAAATATAATGAAAAGATGCTGGGACAAAAATCCTCAAAAGCGTCCTGAGATGCATGAGGTGGTGAGGATGTTGGAAGCAATTGATACAAGCAAAGGAGGTGGAATGATACCAGATGATCAGACTCCATTATGTTTTTGTTTTATGGCTGGTCGCCGTGGTCCGTAA 1158 0.4413 MQSEAGGPSSPNMGLEGGAGNSRMNGSGNRSAKDMIFRADKIDLKSLDAELERHLSKAYSRNAEKNRRKEEWEIDLAKLDLRYVVANGAYGTVYRGTYDNQDVAVKVLDWGEDGVATAAEIAGLRAAFRQEVTVWQKLDHANVTKFIGASMGTSNLKIPPSDAGGQDNLPSKACCVVVEFVHGGTLKQLLLKNRRTKLPYKVVIQLALDLAKGLSYLHSRKIVHRDVKTDNMLLDENQNLKIADFGVARVEAVNPSEMTGDTGTVGYMAPEVINGKPYNRSCDVYSFGICLWEIYCCDMPYLNLSFADASAAVANRNLRPEIPRCCPSALANIMKRCWDKNPQKRPEMHEVVRMLEAIDTSKGGGMIPDDQTPLCFCFMAGRRGP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05563 385 CDD STKc_MAP3K-like 88 355 - -
Trre1g05563 385 Gene3D Phosphorylase Kinase; domain 1 58 158 - -
Trre1g05563 385 ProSiteProfiles Protein kinase domain profile. 79 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05563 385 PRINTS Tyrosine kinase catalytic domain signature 178 191 IPR001245 GO:0004672|GO:0006468
Trre1g05563 385 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Trre1g05563 385 PRINTS Tyrosine kinase catalytic domain signature 326 348 IPR001245 GO:0004672|GO:0006468
Trre1g05563 385 PRINTS Tyrosine kinase catalytic domain signature 216 234 IPR001245 GO:0004672|GO:0006468
Trre1g05563 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Trre1g05563 385 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 359 - -
Trre1g05563 385 Pfam Protein tyrosine and serine/threonine kinase 82 355 IPR001245 GO:0004672|GO:0006468
Trre1g05563 385 FunFam Kinase suppressor of Ras 1 68 161 - -
Trre1g05563 385 SUPERFAMILY Protein kinase-like (PK-like) 64 355 IPR011009 -
Trre1g05563 385 SMART serkin_6 79 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05563 385 Gene3D Transferase(Phosphotransferase) domain 1 183 365 - -
Trre1g05563 385 MobiDBLite consensus disorder prediction 1 30 - -
Trre1g05563 385 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05563 Trre-Chr1 60986073 60989071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05563 21 385 MAP Kinase Kinase Kinase AT3G22750 72.480 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre1g05563 PK_Tyr_Ser-Thr 7.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05563 - - gmx:100803917 616.305