Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05562 ATGGATTCCAATAACCCTTACAATATTGACGACGACGAAGACGATGAGGGATTGGATTGGGAAGCAGTTGCAAGAGCAACCGACGCCGTTTGCCAATTGAAAAGTGAAGCAAAATCAACTGGAAACGAAGCGGAAAAGGTTTATCAAAAGGGGAAGGAAAAGGGAAAGGGAAAGCAATCCACTCTCGATAATTTCATTCGAATTTCGAAAAAGGAAACTGAAACGATTCAGTTTCAAGAAAATGATGTTGAAGAATCTCCTTGCACTCACCTCATTGATACCGAAGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTACCCAGACTGCACTCTTTCAAAACACATTGGTCGCCTTGCCAACAGGACTTGGCAAAACCCTCATTGCCGCTGTTGTCATGTTTAACTACTTTAGATGGTTTCCTGAGGGAAAAATAGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGTGGGGATACCTCAAGAATTGACAGTTGATATGACTGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGACATTCAATCGGGCAAATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCTTATTGTGAAGCAGTTCGTGAGATAATGGCTGTACCAGTGCAACTAAGAATATTAGCGTTAACTGCAACACCAGGATCAAAGCAGCAGACCGTCCAGGATGTTATTAATAATTTGCATATCTCCAAGCTCGAACATCGTAGTGAAACTGACCATGACGTTATATCATATGTTCACGACAGGAAGATAGAGTTAATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATTGTTGCCAGGCTTACTAATATTGGGGCCATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAGGGGCACATGCAAGATCTTTCACATATCAACTCTGGAGATGTTGAAGGGTATTTTGGAGTTCTTATTACTCTTTATTACATTCATAAACTGCTTTCAAGTCACGGAATAAGGCCAGCACATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCAGCAAAGCTTGTCTCATGGAGCATCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTACAGAGAAAGTGTCAGGGACATAATGGTTGCACTTGGAGGTACTGGGGATCAAGTTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGCCAGTCCCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTAGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGTATGGGGAGAACTGGAAGAAAGCATGATGGACGAATTCCCCACGTCCTTAAACCAGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGCCAAAAGAATGTGATAGAAGACCACCTTCAAATTTCTGCATCGAAAGACAAACTCACTCTTGATGAAATTGGTTTACTTGAAAAGTATTTTCCCTCCACCGGTGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTTTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTATGGATCATTGATGCTTATAGACACGATGCAGCGTTTGCAAGGACTGCCCACATGTCCAGGAGATAGCGAAAATTCTTCGCTTCAGGAAGGGAGGTATTTAGGAAATAGTAAGCCAGTCGTCATTATCGATCTTGATGAAGCTAAAAACGATAATGAATTATGCTCTAAGGAGGCAATGAGAAGGAATGTAGATTCTATAAATTGTCTGGAGCTGGATTCCAGTGACATGGGTAAGCACCAAGAGGAAACATGTGATGTTAATGAGACAATTCCCGAGACTCCAGATGCCAAGAGAACTTTGTCAAATGAAGGAGCTAATGCCACTGAAACAGCAAATCCTATTGAGCAGACTTCTTCATTGGCTATAGATGCTTGTGATAACGACATGAGAGATGAAGAACTTAGCCCTCGTTTAACTAATTTGATTATAAGTGGTGTTGTTCCTGAGTCTCCCATCGATGAAAGAGGGCAATCAAGAAATATGTTTGTCATTCGAGGTTGTATTTCACCTGTTCATCTCCAGGAAGAACATGATGTTCCCTCTTTAAGTTGCAGGGAAACTGAAAAAGTCATTGTTGATAGTGACACTGGCAAGAATGTATGTACTTCCCCTGTTAATGAAACCCAAACCCCTTTGCTTGAGTTGAAGAATTGTGCAATTAGAAGAGGACGTGTCTTTGTTTCTCAAATTGAGGAAGAGCATATACATATTGTTGACCCAAGCTTCAGCGAAGAATCACATCCAAGTTGTGGTGAAAGATCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGGAAAGTTGAAGATACTGAAAGTAACATGAATCAGAAAAAGAATAATATTTTTGATTCAACAATGAACTTCTCAAAACCATCTCCTGCCAACAATCCCACACGATATAAGCATGGCCAAGGTATAAGGAAACTGGCCAATGTGAGAGACTTCATTGAAGAGGAAGCCGAGGTATCTTCAGATGCCTCTGTATCTAATGATGAAGATGTCGAGGATGGCAATTCTTGTGACAGTTTCATAGATGACCGAATCAATGCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATAGACATGATGGCAATTTACAGGCGTTCGTTGCTCAGTCAAACACCTATTAGTGGAGTACCTAAGTTTTCCACTACCTTCAGTCCTGACAATCTGACTATGACAGCCAGTATTGGTGAAAGTGGTAATTCATCAGGCAAGACAGCGAGTCGTTTCCAGACAGGACAGACCAGTCATTCAGCTAATCGAACTTCAGAATCAGTATGTCTGGACCAGATGACCTCAGAAGCAATGCCTTCGACCAGTTTTCCAACTGGGACAGATATAAGAAGCCGTAAAAGAAGATTGGCATTTCATCATTCTGGACATTTTCCAAGTATGAATCTTGAACCTGAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATGGCAATGCAACTATAGATGTTCTATGTGATGATCAATTTTATAATGATATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCGATTCTGAAACGGAAATTAGATTTGTCAATTCCGAAACAAGATATAAACCCTCAATTGCATGAACCGAACCTTGATGTTAGTATGTCTCCGTCATTCGACCTTGGTATATGA 3606 0.4018 MDSNNPYNIDDDEDDEGLDWEAVARATDAVCQLKSEAKSTGNEAEKVYQKGKEKGKGKQSTLDNFIRISKKETETIQFQENDVEESPCTHLIDTEAAKTWIYPVNVPLRDYQFHITQTALFQNTLVALPTGLGKTLIAAVVMFNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIVGIPQELTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIQSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVREIMAVPVQLRILALTATPGSKQQTVQDVINNLHISKLEHRSETDHDVISYVHDRKIELIQVAMGQDAVEINNKFLEVIRPIVARLTNIGAIQNRDYRTLSPCVLLEMREKFRQGHMQDLSHINSGDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYMSKNEDILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMVALGGTGDQVRATEFIGQSSGKTMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHVLKPEVQYVELSIEKFIPRQKNVIEDHLQISASKDKLTLDEIGLLEKYFPSTGENRCRLSLIAFPHFQTFPSRVHKVKHSYGSLMLIDTMQRLQGLPTCPGDSENSSLQEGRYLGNSKPVVIIDLDEAKNDNELCSKEAMRRNVDSINCLELDSSDMGKHQEETCDVNETIPETPDAKRTLSNEGANATETANPIEQTSSLAIDACDNDMRDEELSPRLTNLIISGVVPESPIDERGQSRNMFVIRGCISPVHLQEEHDVPSLSCRETEKVIVDSDTGKNVCTSPVNETQTPLLELKNCAIRRGRVFVSQIEEEHIHIVDPSFSEESHPSCGERSVSIKPARKFKRLRKVEDTESNMNQKKNNIFDSTMNFSKPSPANNPTRYKHGQGIRKLANVRDFIEEEAEVSSDASVSNDEDVEDGNSCDSFIDDRINATAASQPEASRIDMMAIYRRSLLSQTPISGVPKFSTTFSPDNLTMTASIGESGNSSGKTASRFQTGQTSHSANRTSESVCLDQMTSEAMPSTSFPTGTDIRSRKRRLAFHHSGHFPSMNLEPEFALQSKKESVNGNATIDVLCDDQFYNDIDLDELEAQATSILKRKLDLSIPKQDINPQLHEPNLDVSMSPSFDLGI 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05562 1201 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 283 IPR014001 -
Trre1g05562 1201 CDD DEXDc_FANCM 106 287 IPR044749 GO:0005524
Trre1g05562 1201 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 4 569 - -
Trre1g05562 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 569 IPR027417 -
Trre1g05562 1201 MobiDBLite consensus disorder prediction 741 760 - -
Trre1g05562 1201 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 441 614 IPR001650 -
Trre1g05562 1201 MobiDBLite consensus disorder prediction 1180 1201 - -
Trre1g05562 1201 Gene3D hef helicase domain 312 435 - -
Trre1g05562 1201 MobiDBLite consensus disorder prediction 746 760 - -
Trre1g05562 1201 MobiDBLite consensus disorder prediction 1051 1079 - -
Trre1g05562 1201 Gene3D - 104 298 IPR027417 -
Trre1g05562 1201 SMART ultradead3 104 297 IPR014001 -
Trre1g05562 1201 Pfam Type III restriction enzyme, res subunit 121 265 IPR006935 GO:0003677|GO:0005524|GO:0016787
Trre1g05562 1201 MobiDBLite consensus disorder prediction 978 993 - -
Trre1g05562 1201 CDD SF2_C_FANCM_Hef 439 569 - -
Trre1g05562 1201 SMART helicmild6 475 565 IPR001650 -
Trre1g05562 1201 CDD FANCM_ID 315 430 IPR039686 GO:0006281|GO:0043138
Trre1g05562 1201 FunFam ATP-dependent RNA helicase, putative 428 584 - -
Trre1g05562 1201 MobiDBLite consensus disorder prediction 39 57 - -
Trre1g05562 1201 MobiDBLite consensus disorder prediction 974 997 - -
Trre1g05562 1201 MobiDBLite consensus disorder prediction 36 57 - -
Trre1g05562 1201 FunFam Fanconi anemia, complementation group M 103 298 - -
Trre1g05562 1201 Gene3D - 436 582 IPR027417 -
Trre1g05562 1201 Pfam Helicase conserved C-terminal domain 448 564 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05562 Trre-Chr1 60967875 60979533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05562 414 563 Eukaryotic Initiation Factors Gene Family AT3G13920 28.947 3.76e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05562 K10896 - gmx:100820078 1482.62