Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05561 ATGGATGCAACAAAGAACAAGAACACCCCTCTTTCCAACTTACAAGAAGAGGATGAGTTTTTGTTTGGCTACTTCAATAGTCTATCGCCTTTAAAGACCAAAGAGCGCGTTGAAGCTACTCAAATGTTGAACTCACTTGGGATGGATTATTCTCTTTTCGCATCACCTGATGCGCCCATTCACGAGGATTCCATAGTCCTCATGAGGAATAAAACTCTGAGCACATCAAAGCCAACTCATAAAGAAGCTCTTACTGATTCTGCTCATGCATGTCATTACTCACTTGAGCCATCTAGTCAACATACAAAGATTGAACTTCCACAAGCTATGCATGATAATCCTTGTAGCTCCGAACAATGTCCTCTAATTTCAGTTGAAGAGGCTAACTGGGCTCTTGAATTACTTGGCATGCAAGTACCAAATAGTACAAATATTCAGGAAGTAGGTCAGGTTGAGGCAAACATCGAAGGAGCGGATTGTGAATACAATAACTTAAGTAGTATAACACAATCAGTGAATCTGCTGCCACAATCTACGACTAACAGTAATTATAAAATGCAAAATGTTGAACATGTTGCTTCTAGTTCAAAACATGAAATTGAATATAATCCTTCTGAACCTATAGCTGCTGCAGACATAAATCAAATATGGAACAATCTTGCTAATGTTGCTTTAATGGATAGCGATCCAATTGCAAGAGGGGTCGATGAGGTTGCTAGAATTAGCCGCAGTATAATGAATTCATCTCCAAGCCACCAGCCTGAGATGACCAGTTTGCAAAGGAAGAACTCTTTTTATACTTCAAACATTAGTTCATGTACAACAACATCTGATAAGATGAATGCTATTAATGAAAAGTCACTGCTTCCGAGAAAAAACACTAGTTGTTCTTCTGGAAGGAAACCTGAATCACCGAGCCACACTTCTTCTTTTCACCTTTCTGCAAGGCAAGGGCATCACCTATTGTTGATCCCTACACCAATGGAAAGACATTTGGAGCCATCTGAGAATGATGAAGATTTGTGTTGGAGTACCCCCGACCTGATGAGTAGAGTGAAATTTAATGACCTAACTAATAAACTATTGGATCAAAACATGAAAAGGACGTTGAAAGTGCAGAATACAGGTTCGGTTGGTCCAGTTTCTTCTGGCTCAGAACATGAAATGAAAGAAGAAAGTGCTGAATTCTGTCAGAATATTCCCAAAAGGAAGAGGAAAGTGAAAAAGTCGGATCTAACCGGGGAAGGAGGTGCATGCAGAAGCTGTAAATGTAAAAAATCAAGGTGTTTGAAAAATTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGGACCTTGTGCATGTCAAGACTGCTCAAATAGAGGAGATAATGAAGATACAATTCTGCAAGCTCGTAGGAATAATGATTCTAAAGTTGTAACAAATTCTAATTCCTCGCCACAATTTGGGGAGGACCCTAACATAACTTTGGCTTCAAAGTTACAGAAAAGAGTATGTAATTGCAATAAATCAGGTTGCCAGAGGAAATATTGCGCATGCTTTAAGGATGGTGTTGGTTGCTCTCCAATTTGTAAATGTCAAGGATGCAAAAATATACATGGTAGAAAGGATAGCACAGCTGAAACAAAATCTGAGCTTGAAGAAACAAAAGCATTACAAATTTCCAGAACATTGCCTCCATTACCTTATTCATTGATGGGAAAGCCGCCGCACATATCTTGTTCTGAATTGTTCGGCAGCAAAAACCACGAGCCTGTGGAATCAAATACTAATCCTGAATGTGAAAATGGCGTTGAATCATCTCCTACTCGCAATGGTGGCATGAACTCCATTAGAATGAGGACAATTTTGTTACAATAG 1863 0.3929 MDATKNKNTPLSNLQEEDEFLFGYFNSLSPLKTKERVEATQMLNSLGMDYSLFASPDAPIHEDSIVLMRNKTLSTSKPTHKEALTDSAHACHYSLEPSSQHTKIELPQAMHDNPCSSEQCPLISVEEANWALELLGMQVPNSTNIQEVGQVEANIEGADCEYNNLSSITQSVNLLPQSTTNSNYKMQNVEHVASSSKHEIEYNPSEPIAAADINQIWNNLANVALMDSDPIARGVDEVARISRSIMNSSPSHQPEMTSLQRKNSFYTSNISSCTTTSDKMNAINEKSLLPRKNTSCSSGRKPESPSHTSSFHLSARQGHHLLLIPTPMERHLEPSENDEDLCWSTPDLMSRVKFNDLTNKLLDQNMKRTLKVQNTGSVGPVSSGSEHEMKEESAEFCQNIPKRKRKVKKSDLTGEGGACRSCKCKKSRCLKNYCECFAAGVYCIGPCACQDCSNRGDNEDTILQARRNNDSKVVTNSNSSPQFGEDPNITLASKLQKRVCNCNKSGCQRKYCACFKDGVGCSPICKCQGCKNIHGRKDSTAETKSELEETKALQISRTLPPLPYSLMGKPPHISCSELFGSKNHEPVESNTNPECENGVESSPTRNGGMNSIRMRTILLQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05561 620 ProSiteProfiles CRC domain profile. 418 535 IPR005172 -
Trre1g05561 620 MobiDBLite consensus disorder prediction 586 612 - -
Trre1g05561 620 MobiDBLite consensus disorder prediction 282 311 - -
Trre1g05561 620 SMART CXC_2 417 458 IPR033467 -
Trre1g05561 620 SMART CXC_2 495 536 IPR033467 -
Trre1g05561 620 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 498 532 IPR005172 -
Trre1g05561 620 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 420 455 IPR005172 -
Trre1g05561 620 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 5 554 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05561 Trre-Chr1 60954203 60956779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05561 369 551 CPP Transcription Factor Family AT3G22780 43.655 1.12e-42 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre1g05561 TCR 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05561 - - tpra:123897031 852.047