Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05559 ATGATGGATCCACCAGAGAACAAGAACTTCCCTTTTTCCAACAAACAAGAAAAGGATGATTATTGGTTTCACGAATACATCGTTAGTCTACTCTCAGTTGAGGAGCCTGTCTCTATTGATGAATTGCTTGGCAAGCAAGAAACGGGTATTGGCTATGTACAACAAGATGGTGGAACGAAACCTGAGCTACCGAGCTACACATCTTCATTACATGAGATGAATGCTGCTAGTAATGAAAATGCATTGCTTCCTAGTGATTACACTAATGATTCACAAAGGTGTGTTTTGCCAAGAAATTATTCTTATGTGATTGCACTTCCAGCCTTAAATAGGTCTTCTACAACGAAAACTGAATCATCGAGCAACACTTTTTCGTTGCTTCTTTCTGCCAACGATGGGCATTGCCTATCGCAGGTCCCTGATTCAACGGAGAGATATTTGGAGCCATCCGAGATTGAAGCTCGGGCTACTAAATATTTCACTCAGTCATCAGTTCACATTGCTAGGTCTTCTGCAACGAAAATTGAATCGCCAAACAACACTACTTCTTTGCTTCTTTCTGCCAGCCAAGGGCATCGCCTATCGCTAAACTATGCATCATCGGAAAGACAACTAAGGCCATCCGAGATTCAATTTCAGGCTACTAAAGATTTCACTCAGTCATCAGTTCACAATGCTGGAGAAGATTTCGATCAAAGTCTCTCCAAAAGGAAGAGGAAAGTGCACAGTTCTGATCGAACTGAGGAACGAGGGTCATGCAAAAACTGCAACTGTATGATATCAAACTGTTTGAAACCTAATTGTGAATGCTTTGCTGCCGGAGTCTACTGTGCGGAACCTTGCTCGTGTAAAGAGTGCTTAAATAAACCTATTGATGAATATATAACAATTCTGCAAACTCAAAGGAAGATTGAGTCTAGCAATTCACACTTACTTGTTCCTAAAGTCATAAGAAGTCCTAATACCTCACCTCGGGATAACTCCAACAAAACTCCAGCATCAAAGAATTGCAATTGCAAGAAAACAAGCTGCAATAAGAAATCTTGTTCTTGTTCCAAGGGTCGTGTCGGTTGCTCCATTAGCTGTAAATGTGAAGGGTGCGAAAATATATACGGTAGAAAGGATAACCAAGACCAAGAACTTCGGCGGGAATCAAATGCTATTGGATCTCAAACTAAATTTGAAAAGCATTTTCAAACTGTTGCAGATGATGATGGGATTCAAGTTACACTCCATAACACTAATTACAAAATTTAA 1257 0.4018 MMDPPENKNFPFSNKQEKDDYWFHEYIVSLLSVEEPVSIDELLGKQETGIGYVQQDGGTKPELPSYTSSLHEMNAASNENALLPSDYTNDSQRCVLPRNYSYVIALPALNRSSTTKTESSSNTFSLLLSANDGHCLSQVPDSTERYLEPSEIEARATKYFTQSSVHIARSSATKIESPNNTTSLLLSASQGHRLSLNYASSERQLRPSEIQFQATKDFTQSSVHNAGEDFDQSLSKRKRKVHSSDRTEERGSCKNCNCMISNCLKPNCECFAAGVYCAEPCSCKECLNKPIDEYITILQTQRKIESSNSHLLVPKVIRSPNTSPRDNSNKTPASKNCNCKKTSCNKKSCSCSKGRVGCSISCKCEGCENIYGRKDNQDQELRRESNAIGSQTKFEKHFQTVADDDGIQVTLHNTNYKI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05559 418 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 68 399 IPR044522 GO:0003700
Trre1g05559 418 ProSiteProfiles CRC domain profile. 252 372 IPR005172 -
Trre1g05559 418 SMART CXC_2 332 373 IPR033467 -
Trre1g05559 418 SMART CXC_2 251 292 IPR033467 -
Trre1g05559 418 MobiDBLite consensus disorder prediction 230 250 - -
Trre1g05559 418 MobiDBLite consensus disorder prediction 225 250 - -
Trre1g05559 418 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 335 369 IPR005172 -
Trre1g05559 418 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 254 289 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05559 Trre-Chr1 60939136 60941322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05559 234 375 CPP Transcription Factor Family AT3G22780 53.378 3.57e-43 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre1g05559 TCR 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05559 - - tpra:123912855 385.571