Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05556 ATGGCCGTTGGAAAGAACAAGCGTATCTCAAAGGGAAAGAAAGGTGGCAAGAAGAAAGCAGCTGATCCCTTTGCCAAGAAGGATTGGTATGACATTAAAGCTCCTTCAGTTTTTCAAGTGAAAAATGTTGGCAAAACCCTCGTATCTCGTACTCAGGGTACCAAGATTGCTTCAGATGGACTCAAACATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGAGATGAGGAACATGCTTTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAGAATCTTTTGACAAATTTCTGGGGAATGAGTTTCACAACTGACAAACTGAGGTCCTTGGTGCGTAAGTGGCAATCTCTAATTGAGGCCCATGTTGATGTGAAGACTACCGATAATTACACATTGAGAATGTTTTGCATTGGATTTACCAAGAGGAGAACTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGCCAGATTAAACAGATCCGTAGGAAGATGAGAGAGATCATGATCAACCAAGCAACATCCTGTGATTTGAAGGAATTGGTCCGTAAGTTCATTCCAGAAATGATTGGAAAGGAAATTGAGAAGGCCACATCTAGTATTTACCCTTTGCAGAATGTGTTCATTCGTAAAGTGAAGATCCTTAAAGCTCCTAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGTGATTACGCTGAGGACATCGGCACAAAGGTAGACAGACCTGCCGAAGAAACGGTGGCAGAGGAACCTACTGAAATTGTTGGAGCTTGA 786 0.4224 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEEHAFRKIRLRAEDVQGKNLLTNFWGMSFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRMFCIGFTKRRTNQVKRTCYAQSSQIKQIRRKMREIMINQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYAEDIGTKVDRPAEETVAEEPTEIVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05556 261 MobiDBLite consensus disorder prediction 1 15 - -
Trre1g05556 261 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g05556 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Trre1g05556 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Trre1g05556 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 252 - -
Trre1g05556 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Trre1g05556 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05556 Trre-Chr1 60922880 60925086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05556 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 84.351 2.65e-162 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05556 K02984 - gmx:100813273 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05556 1 60922880 60925086 Trre1g05556 1 60922880 60925086 ECH