Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05555 ATGGAATCCCCTTATAGTTATGGCCTTACCATAAAATTCTTAGTTATCCTTCTTACCATTCTCAACTCCATTAATCCCTCATACCAATCACTACCAAAACTAAATCCAAGACTCATCAAAGCCTACACAGCACTTCAAGCATGGAAACAAACATTCACCTCTGACCCTAAAAACTTTACCTCAAATTGGTATGGCCCAAATGTATGCAACTACACAGGTATCTACTGTGCACCATCACCAGATGATCCCTACATCTACACTGTTGCTGGTATAGACATAAACCATGCAAAAATAGCAGGTTCATTACCAGAAGAACTTGGTCTTTTAACAGACTTAGCTCTTTTCCATATAAACTCAAATAGTTTCTATGGTTCCATCCCAAACAGTTTCAGTTATCTTCACCGTCTTCACGAACTCGACATTAGTAACAACAAATTCTCAGGATTGTTTCCCGAACCGGTTCTCTGCATTCCTTCATTAAAATTCTTAGACATAAGATTCAACAATTTTTATGGAGATGTTCCTGAGAAACTTTTTGACCTTAAACTTGATGCTCTTTTTATTAACAACAATAAATTCCAATTTTCTTTGCCTGAAAATTTTGGAAACATGCCGGCTTCTGTTGTGGTTTTCGCGAATAATGATATTAAAGGTTGTATTCCATCGAGCGTGGTGAATATGAAGGATACGATTAACGAGATTATTATGACGAATAGCGGAATGAAAGGCTGTTTGCCGGACGAAATCGGGAATTTGGATAAAGTGACAGTGTTTGATGTTAGTTTTAATGAGTTTGTTGGTGAATTGCCTGATTCTATTGGTGGAATGAAGAGTTTGGAAGAGTTGAATGTGGCGCATAATCGATTTTCGGGTGTGGTTCCGGAGAGTATATGTAGGTTGCCAAGGTTGGAGAATTTTACTTATTCTTATAATTTCTTTAGTGGTGAATCGGAAAGTTGTGTTAAGTTGGGTAAACATAAGGATGATAAGAAGAATTGTATTCCTTTTAGGCCTTTGCAAAGGTCTAGTTATGAATGTCAAGTTTTTTATGAACATCCTGCTCATTGCAGTGGTGTTGGTTGTTCTTTTACAACTCTATCACCTCCTCCGCCACCACCTCCACCGCCTCCCCCACCTCCCCCCCCTCCTCCTCCCCCACCCCCGCCTCCTCCACCTCCTCCGCCACCGCCCCCACCCCCGCCACCTCCCCCACCCCCACCTCCTCCGCCACCGCCCCCACCCCCGCCTCCTCCCCCGCCGCCTCCACCTCCTCCTCCACCGCCACCTCCCCCACCCCCGCCTCCTCCGCCACCGCCACCTCCCCCACCCCCACCTCCTCCGCCACCGCCGCCTCCACCTCCTCCTCCACCGCCACCTCCCCCACCCCCACCTCCTCCGCCTCCACCAATAGCTTACTACCATTATCTTTGA 1431 0.4584 MESPYSYGLTIKFLVILLTILNSINPSYQSLPKLNPRLIKAYTALQAWKQTFTSDPKNFTSNWYGPNVCNYTGIYCAPSPDDPYIYTVAGIDINHAKIAGSLPEELGLLTDLALFHINSNSFYGSIPNSFSYLHRLHELDISNNKFSGLFPEPVLCIPSLKFLDIRFNNFYGDVPEKLFDLKLDALFINNNKFQFSLPENFGNMPASVVVFANNDIKGCIPSSVVNMKDTINEIIMTNSGMKGCLPDEIGNLDKVTVFDVSFNEFVGELPDSIGGMKSLEELNVAHNRFSGVVPESICRLPRLENFTYSYNFFSGESESCVKLGKHKDDKKNCIPFRPLQRSSYECQVFYEHPAHCSGVGCSFTTLSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPIAYYHYL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05555 476 SUPERFAMILY L domain-like 41 321 - -
Trre1g05555 476 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 30 468 - -
Trre1g05555 476 PRINTS Proline rich extensin signature 367 379 - -
Trre1g05555 476 PRINTS Proline rich extensin signature 401 413 - -
Trre1g05555 476 PRINTS Proline rich extensin signature 381 397 - -
Trre1g05555 476 PRINTS Proline rich extensin signature 413 434 - -
Trre1g05555 476 Gene3D Ribonuclease Inhibitor 40 334 IPR032675 -
Trre1g05555 476 Pfam Leucine rich repeat N-terminal domain 43 76 IPR013210 -
Trre1g05555 476 FunFam Leucine-rich repeat extensin-like protein 1 42 203 - -
Trre1g05555 476 MobiDBLite consensus disorder prediction 384 437 - -
Trre1g05555 476 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05555 Trre-Chr1 60918479 60919909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05555 32 361 Leucine-rich Repeat extension Gene Families AT3G22800 66.163 1.22e-161 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05555 - - tpra:123881562 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05555 1 60918479 60919909 Trre1g05555 1 60918479 60919909 ECH