Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05554 ATGGGAAAAAAAGGTAAATGGCTTAAAAACTTGTTGACAGGGAAGAAGGACAAAGAAAAAGAGAAAGAAAAAGAAAATCAGAATTTTTCAAATGGAACAGAAAATCCAACTACTCCAGTTTCAACATCAACAACAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCAACAGCTACACCAACAACAGTTTCCAAGGAATTGAATAACTCAGATGTTAATGCTTCAGTGACAGTGCAAAGTACTGTCACTGATATTCAGAATGAGCAGAGGAATCATGCTATGGCTGTGGCTGTTGCTACGGCCGCAGCAGCTGATGCAGCAGTTGCGGCTGCACAAGCTGCGGCTGCTGTGATCCACTTGACTTCTGGTTCAAATGAGACTCCAAAAAGTATCGAAGATTCTGCTGCTGTTAAGATTCAATGCGTCTTTCGATCTTACTTGGCAAGAAAGGCATTGTGTGCTCTAAGAGGATTAGTGAAGTTGCAGGCACTGATAAGGGGTCACTTGGTGAGAAAACAGGCTAAGGCAACACTTAGATGTATGCAAGCTTTGGTCACAGCACAAGCTAGAGCTCGAGCTCAAAGGATCCGAATGGTGTCCGAAGGAAAGCCTAATCCAAATCAATCAACTCACAGAAATGCTATGGAAAATGACTTATTCAGGCAAATATATAATGAAATGGATAGAAGCTTGGAGGACAATATCAAGATTGTGGAAATGGACTTTTGTGAATCAAAAGGTAACTCTACAAGCAGAAGCAGCAGTGTATATAATCATGGACAAAATTATGAACAATCTGAACATAGATATTCCACAAATGGTTCTTACTCAAAAGAAGAAAACTACAAAGTATCACCAGCTCCATCAGCTTTAACAGAATTGAGTCCAAAAGCATGCAGTGGCCATTTTGAAGATTGTTTCAGTACAGCTCAAAACAGCCCTCAATGCTATTCTGCAAGATCGAAAACCGACGGTTCAATTTCGAATCATCCTTTTTCTTTCCCTAGGCCATCTTATGCAGAACCTATGTCCTATGATTACCCTTTATATCCAAGTTATATGGCTAATACAGAATCATCAAGGGCTAAAGTTAGATCACAAAGTGCACCAAAACAAAGGCCAGATTCATTTGAGAAGCAACCTAGCCGCCGAAGAATTTCGGTCGAGGGAAGAAATGTACCTAGACCAGTGAGGATGCAGAGGTCATCTTCACAGGTAGGTGCAGCTGCTCAGAATTATCATTATCCATGGTCAATCAAGCTTGATAGATCCGCGGTTTCGCTCAAAGACAGCGAGTGTGGCTCGACAAGTACAATGCTCACAAATACTAATTACTGCAGATCCCTTGTTGCATATGATCCAGATGGAGATAGGTACTAA 1386 0.4091 MGKKGKWLKNLLTGKKDKEKEKEKENQNFSNGTENPTTPVSTSTTKEKKRWSFRRSSATATPTTVSKELNNSDVNASVTVQSTVTDIQNEQRNHAMAVAVATAAAADAAVAAAQAAAAVIHLTSGSNETPKSIEDSAAVKIQCVFRSYLARKALCALRGLVKLQALIRGHLVRKQAKATLRCMQALVTAQARARAQRIRMVSEGKPNPNQSTHRNAMENDLFRQIYNEMDRSLEDNIKIVEMDFCESKGNSTSRSSSVYNHGQNYEQSEHRYSTNGSYSKEENYKVSPAPSALTELSPKACSGHFEDCFSTAQNSPQCYSARSKTDGSISNHPFSFPRPSYAEPMSYDYPLYPSYMANTESSRAKVRSQSAPKQRPDSFEKQPSRRRISVEGRNVPRPVRMQRSSSQVGAAAQNYHYPWSIKLDRSAVSLKDSECGSTSTMLTNTNYCRSLVAYDPDGDRY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05554 461 ProSiteProfiles IQ motif profile. 134 162 IPR000048 GO:0005515
Trre1g05554 461 MobiDBLite consensus disorder prediction 360 377 - -
Trre1g05554 461 SMART iq_5 156 177 IPR000048 GO:0005515
Trre1g05554 461 SMART iq_5 133 155 IPR000048 GO:0005515
Trre1g05554 461 MobiDBLite consensus disorder prediction 249 270 - -
Trre1g05554 461 Coils Coil 8 28 - -
Trre1g05554 461 Pfam IQ calmodulin-binding motif 161 177 IPR000048 GO:0005515
Trre1g05554 461 Pfam IQ calmodulin-binding motif 136 154 IPR000048 GO:0005515
Trre1g05554 461 MobiDBLite consensus disorder prediction 378 393 - -
Trre1g05554 461 MobiDBLite consensus disorder prediction 1 65 - -
Trre1g05554 461 MobiDBLite consensus disorder prediction 10 28 - -
Trre1g05554 461 Gene3D - 134 185 - -
Trre1g05554 461 ProSiteProfiles IQ motif profile. 158 185 IPR000048 GO:0005515
Trre1g05554 461 PANTHER IQ-DOMAIN 5-RELATED 1 391 - -
Trre1g05554 461 Pfam Protein of unknown function (DUF4005) 315 394 IPR025064 -
Trre1g05554 461 MobiDBLite consensus disorder prediction 29 46 - -
Trre1g05554 461 MobiDBLite consensus disorder prediction 360 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05554 Trre-Chr1 60908908 60911143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05554 1 451 IQD Protein Family AT4G14750 45.203 8.03e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05554 - - gmx:100817667 624.394