Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05553 ATGGCTGGTAGGTTACCTGGTGTTGGATTGTCACCAAGAAAAAGATCAGAAAATCATCACAACAGACATGAACACTATGTTACCTACAGAGACTCATCCTATCTAAGGGAATCATTAGAGACACCATGGACTTCAATGACTACTACCTTAGATGAAAGTGCTTTTAAAGCCAAACAAAGACTTCAGAAGAAACTTGGTTACTCTCCCAGGTCAATTGAACAAAATCCCAAAAAAGGAAAAGAAAGTAAAAGCAGATTCCATAAGAAAGATGCAGGACTAGGAAGGAAGTTACTAGAAAGTTCATGGTTATTACGTGGAAACAAGTTTAAGAAAGATACAAAAGTTTGTGCTGTGTGCTTAGAAGATTTCCATCAAGATGAAGAAGTTATGAACCTTTCTTGCTCACATAAGTACCATTCAGCATGTCTTCTCCCTTGGCTTGAAGAACACCCTCATTGTCCTTATTGTAGAACCATGGTTCAGCCAAGGGATTAG 495 0.3838 MAGRLPGVGLSPRKRSENHHNRHEHYVTYRDSSYLRESLETPWTSMTTTLDESAFKAKQRLQKKLGYSPRSIEQNPKKGKESKSRFHKKDAGLGRKLLESSWLLRGNKFKKDTKVCAVCLEDFHQDEEVMNLSCSHKYHSACLLPWLEEHPHCPYCRTMVQPRD 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05553 164 SUPERFAMILY RING/U-box 115 162 - -
Trre1g05553 164 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 43 158 - -
Trre1g05553 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 163 IPR013083 -
Trre1g05553 164 SMART ring_2 116 156 IPR001841 -
Trre1g05553 164 Pfam Ring finger domain 115 157 IPR001841 -
Trre1g05553 164 CDD RING-H2_PA-TM-RING 115 157 - -
Trre1g05553 164 MobiDBLite consensus disorder prediction 74 90 - -
Trre1g05553 164 MobiDBLite consensus disorder prediction 61 90 - -
Trre1g05553 164 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Trre1g05553 164 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05553 Trre-Chr1 60895523 60896991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05553 110 160 C3H Transcription Factor Family AT3G58720 45.098 4.29e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05553 - - gmx:100527548 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05553 1 60895523 60896991 Trre1g05553 1 60895523 60896991 ECH