Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05550 ATGAACGGCGGAAGCACCGTCACCTCCTTCCGATCCATCCTCGACAAACCCCTTAACCAGCTCACCGAAGATGACATTTCTCAACTCACTCGTGAAGACTGTCGCAGATTCCTCAAAGATAAAGGGATGCGCAGACCTTCCTGGAACAAATCTCAGGCGATCCAGCAAGTCATTTCTCTCAAAGCACTTCTAGAACCTACCGACGATGATCTCCCTGCTCCCGTCGGTGTCTCCTCCGCCATTCACCACCATCATCACCACCACCCTCAACCTCCTCGGGGGAATTTGAATGAAGCTCCGGCGAAGGGCTCCGATCCCGATGATACCGGTTTTCATACTGCGGAGGATCTTAACAAATCTACTTCAACTGCTGCTGAAATACATACTGAAACGAATGATGTCAATGTTGTTAAACCCTCCGGGGGGTGCGCAGCTAGTGGGTCGTTTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGATGGAGTCTCATCGGATAAGGCACGATCAATCATGCAGCTTGCTGCATGTCCATCCTCGTTTCCTCAGGATAATCTTTTAAATAAAAATGCAGCAGTGTGGGCTTCTCCTTGCAACATACCGATTGATAAGGATGTCCTCTTTCCGAATGACACAGCAATCCTTCAGGTCGCTCAAACAGATAAGATGGTGGAATATCCTCTGCAATTCAGGGAGAAAGGGAGCATAGCTCGTGATGCTGATGTAGAGGGTCAGGCAAGCCGAAATGCGTCACTGCAACGATATCGTGAAAAGCGAAAGGACAGGGGAAGATCGAAAGGCAACAAACTGACTGGCATAACTTCATCTAACTTTGAGATGTATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGTAATTCAAGTCGTAGTAGCACTGACTCTCCACCACAGCCTAGACTGCCTCTAGTTTCCGGTGGCTCAGCTGAAAACCAGCCAAAAGTTACCCTTCCCATTGATTTGAATGATAAAGATGTTCAAGAATGCTAA 1020 0.4755 MNGGSTVTSFRSILDKPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQVISLKALLEPTDDDLPAPVGVSSAIHHHHHHHPQPPRGNLNEAPAKGSDPDDTGFHTAEDLNKSTSTAAEIHTETNDVNVVKPSGGCAASGSFGQMTIFYCGKVNVYDGVSSDKARSIMQLAACPSSFPQDNLLNKNAAVWASPCNIPIDKDVLFPNDTAILQVAQTDKMVEYPLQFREKGSIARDADVEGQASRNASLQRYREKRKDRGRSKGNKLTGITSSNFEMYLNLPVKLHASNGNSSRSSTDSPPQPRLPLVSGGSAENQPKVTLPIDLNDKDVQEC 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05550 339 MobiDBLite consensus disorder prediction 241 275 - -
Trre1g05550 339 ProSiteProfiles Tify domain profile. 145 180 IPR010399 -
Trre1g05550 339 Pfam tify domain 151 179 IPR010399 -
Trre1g05550 339 MobiDBLite consensus disorder prediction 292 339 - -
Trre1g05550 339 Pfam Jas motif 248 265 IPR018467 -
Trre1g05550 339 SMART tify_2 145 180 IPR010399 -
Trre1g05550 339 MobiDBLite consensus disorder prediction 292 309 - -
Trre1g05550 339 MobiDBLite consensus disorder prediction 71 115 - -
Trre1g05550 339 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 11 282 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05550 Trre-Chr1 60821284 60827115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05550 7 294 Tify Gene Family AT4G14720 45.215 3.93e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre1g05550 tify 8.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05550 - - gmx:100808970 467.233