Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05549 ATGAACGGCGGAAGCACCGTCACCTCCTTCCGATCCATCCTCGACAAACCCCTTAACCAGCTCACCGAAGATGACATTTCTCAACTCACTCGTGAAGACTGTCGCAGATTCCTCAAAGATAAAGGGATGCGCAGACCTTCCTGGAACAAATCTCAGGCGATCCAGCAAGTCATTTCTCTCAAAGCACTTCTAGAACCTACCGACGATGATCTCCCTGCTCCCGTCGGTGTCTCCTCCGCCATTCACCACCATCATCACCACCACCCTCAACCTCCTCGGGGGAATTTGAATGAAGCTCCGGCGAAGGGCTCCGATCCCGATGATACCGGTTTTCATACTGCGGAGGATCTTAACAAATCTACTTCAACTGCTGCTGAAATACATACTGAAACGAATGATGTCAATGTTGTTAAACCCTCCGGGGGGTGCGCAGCTAGTGGGTCGTTTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGATGGAGTCTCATCGGATAAGGCACGATCAATCATGCAGCTTGCTGCATGTCCATCCTCGTTTCCTCAGGATAATCTTTTAAATAAAAATGCAGCAGTGTGGGCTTCTCCTTGCAACATACCGATTGATAAGGATGTCCTCTTTCCGAATGACACAGCAATCCTTCAGGTCGCTCAAACAGATAAGATGGTGGAATATCCTCTGCAATTCAGGGAGAAAGGGAGCATAGCTCGTGATGCTGAGGGTCAGGCAAGCCGAAATGCGTCACTGCAACGATATCGTGAAAAGCGAAAGGACAGGGGAAGATCGAAAGGCAACAAACTGACTGGCATAACTTCATCTAACTTTGAGATGTATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGTAATTCAAGTCGTAGTAGCACTGACTCTCCACCACAGCCTAGACTGCCTCTAGTTTCCGGTGGCTCAGCTGAAAACCAGCCAAAAGTTACCCTTCCCATTGATTTGAATGATAAAGATGTTCAAGAATGCTAA 1014 0.4763 MNGGSTVTSFRSILDKPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQVISLKALLEPTDDDLPAPVGVSSAIHHHHHHHPQPPRGNLNEAPAKGSDPDDTGFHTAEDLNKSTSTAAEIHTETNDVNVVKPSGGCAASGSFGQMTIFYCGKVNVYDGVSSDKARSIMQLAACPSSFPQDNLLNKNAAVWASPCNIPIDKDVLFPNDTAILQVAQTDKMVEYPLQFREKGSIARDAEGQASRNASLQRYREKRKDRGRSKGNKLTGITSSNFEMYLNLPVKLHASNGNSSRSSTDSPPQPRLPLVSGGSAENQPKVTLPIDLNDKDVQEC 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05549 337 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 11 280 IPR040390 -
Trre1g05549 337 ProSiteProfiles Tify domain profile. 145 180 IPR010399 -
Trre1g05549 337 MobiDBLite consensus disorder prediction 290 337 - -
Trre1g05549 337 Pfam Jas motif 246 263 IPR018467 -
Trre1g05549 337 Pfam tify domain 151 179 IPR010399 -
Trre1g05549 337 SMART tify_2 145 180 IPR010399 -
Trre1g05549 337 MobiDBLite consensus disorder prediction 290 307 - -
Trre1g05549 337 MobiDBLite consensus disorder prediction 71 115 - -
Trre1g05549 337 MobiDBLite consensus disorder prediction 240 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05549 Trre-Chr1 60821284 60827115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05549 7 292 Tify Gene Family AT4G14720 44.554 1.20e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre1g05549 tify 8.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05549 - - gmx:100808970 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05549 1 60821284 60827115 Trre1g05549 1 60821284 60827115 ECH