Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05545 ATGAATCTTCACCATGGTGGAATTAAGGAGGAGTTTATGGGAGGAAGTTCTTCATTTTTTGTGGTTGGTGGTCCTCAACCAATGGGAGGACTTCATGAAAATGGTCCTCCACCATTCCTTACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGTAGAGGGAACAATAGCTTTGTTATTTGGGATCCTCAAGCCTTTTCCATTAGTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTTAGACAACTTAACACATATGGATTTAAAAAGGTTGATCCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAAAACATAATTAGAAGGAGAAAAACAAATCAATCTCAACCAATGCAACTGCAACATCAAAATCTAGACCCTTCATGTGTTGAGGTAGGAAGATTCGGATTAGACGGAATTGAAATCGATCGGTTGAGGCGTGACAGACAAATTCTAATGGTTGAATTGGTGAAACTTAAACAACAGCAACAAAATACTAGAACTTACCTTGAAGCAATGGAAGGAAGGCTTAAAAGAACTGAACATAAACAAAAACAGATGATGAATTTCTTGGTAAGAGCAATGCAAAATCCTAATTTCTTGCAACAATTGGTTGAGAAGAAGGAATGGAGAAAAGAGTTAGAAGAATTTTTTTCTAAGAAGAGGAGAAGAACTATTGATAGTAATGTTGAAGTAGGATATGATGAATTAGGATATGCTAATGAAGATAGTTTAACTTTTGTTAAACTTGAACCATATCAATATGTTGAGGGACATGCTAATCTCATGAACCAATTTGAAATTAGAGATAAAGAGATTGATGTTGAAGTGTTTTGGCAAGATTTGTTTAAAGAGATTATTGAAGATGAAGTAGATGTTGAAGATATAGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCCAAGTAA 996 0.3494 MNLHHGGIKEEFMGGSSSFFVVGGPQPMGGLHENGPPPFLTKTYDIVDDPSTNHIVSWSRGNNSFVIWDPQAFSISLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQKILLKNIIRRRKTNQSQPMQLQHQNLDPSCVEVGRFGLDGIEIDRLRRDRQILMVELVKLKQQQQNTRTYLEAMEGRLKRTEHKQKQMMNFLVRAMQNPNFLQQLVEKKEWRKELEEFFSKKRRRTIDSNVEVGYDELGYANEDSLTFVKLEPYQYVEGHANLMNQFEIRDKEIDVEVFWQDLFKEIIEDEVDVEDIDVLAEQLGYLASSPPK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05545 331 SUPERFAMILY "Winged helix" DNA-binding domain 34 128 IPR036390 -
Trre1g05545 331 Pfam HSF-type DNA-binding 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05545 331 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05545 331 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05545 331 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05545 331 SMART hsfneu3 35 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05545 331 FunFam Heat shock transcription factor 1 32 130 - -
Trre1g05545 331 Coils Coil 161 181 - -
Trre1g05545 331 Gene3D - 31 129 IPR036388 -
Trre1g05545 331 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05545 331 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 242 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05545 Trre-Chr1 60795124 60796972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05545 25 328 HSF AT3G22830 54.039 1.30e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre1g05545 HSF_DNA-bind 4.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05545 K09419 - gmx:100809515 417.542