Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05525 ATGCCAGTGAGGCAAATGAAAGAAAGCTCAGAGCAACACATTGTGATAAAAACCAATTTGCAGAACCCTAAGAATCAACCAAAGGCTTCTCAAAATGGAAAAGCTCCACCACCACCACCAACTTCACCTCAAGCAAAGAACAAAGGAAGAAGAAGAGGAAGAGGTGGAAGAAAATCTGATCAAGTAGAAATTTTGATGAGACCAAGTTCAAGACCATGTACTGCAATAACAAGTACTTCAAATGGTTACAATAATTCTAGTAACATTGATGTTGGTTTTCCAACTTCAAGCAAGTCTTTGAACTTTGCTCCTAGACCTGGATATGGAACAGTTGGGACAAAATGTATTGTGAAGGCTAATCACTTTTTTGCAGAGTTACCAGACAAGGACTTAAACCAATATGATGTTACTATTACCCCTGAAGTGTCATCAAGAACAGTAAACAGATCCATTATAGCTGAGCTTGTGAGGTTGTATAAAGAGTCTGACTTAGGGATGAGGCTTCCAGCTTATGATGGCAGAAAAAGTCTGTATACTGCAGGACAGTTACCCTTTTCTTGGAAAGATTTTAAGATTAAGCTTGTAGATGAAGAGGATGGAGTTAATTGCCCCAAAAGGGTAAAAGAGTACAGGGTGGTGATCAAGTTTGTTGCTAGAGCAAACTTGCATCATTTGGGCCAGTTTCTAGCTGGTAAGCGTGCCGATGCACCGCAGGAGGCGCTTCAAATTCTTGATATTGTACTAAGAGAGCTATCAACTAAGAGGTATTGCCCCATTGGGAGGTCTTTCTTTTCACCTGATATAAGAAAACCACAGCGGCTTGGCGAGGGATTGGAATCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATCGATATGGCATCTGCTGCGTTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGCCAGCTGCTAGGAAAAGACGTGCTGTCAAGGCCATTGTCGGATGCTGATCGAATCAAGATTAAGAAAGGCCTAAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTAACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAATTCAACTATGAAGTCGGTAGTTGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATATACGCACCTTCCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCTAATTACTTACCTATGGAGGCGTGCAAAATTGTTGAAGGGCAACGTTATACGAAAAGATTGAATGAGAAGCAAATTACTTCTCTATTGAAAGTTACTTGTCAGAGACCCCGCGATCGGGAAAATGACATTTTACAAACCATTCAACATAATGCTTATGACCAAGATCCTTATGCAAAGGAATTTGGAATTAACATCAGCGAGAAGCTAGCTTCTGTCGAAGCTCGAATTCTTCCTGCTCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCATGTTGGTCAGTGGAATATGATGAATAAGAAAATGATTAATGGAATGGCTGTTAACCGGTGGGCATGCATAAATTTCTCAAAGAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGACCTCGCTCTGATGTGTCAAGTATCTGGCATGGAATTTAATTTGGAGCCTGTTATCCCTATCTACAATGCGAAGCCTGAGCAAGTGGAGAAAGCATTGAAGCATGTTTACCATGTGTCATCAAACAAAACTAAAGGAAAGGAATTGGAACTTTTGCTAGCAATATTGCCAGACAATAATGGTTCTCTATATGGTGATCTCAAGCGAATCTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTTACAAAGCATGTCTTCAAAATCACTAAACAGTATTTAGCTAACGTGTCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTTGATGCTGTAAGCTACAGAATACCATTGGTTAGCGACATACCAACCATAATTTTTGGAGCAGATGTTACTCACCCTGAAAATGGAGAAGACACTAGCCCCTCAATAGCAGCTGTAGTAGCGTCCCAAGATTGGCCCGAAGTAACAAAATATGCTGGTTTAGTATGTGCTCAAGCTCATAGACAAGAACTTATACAAGATTTATACAAAACTTGGCATGATCCTGTTCGTGGCACGGTTAGTGGTGGCATGATAAGAGATTTACTGATTTCCTATAGAAAAGCAACGGGACAAAAGCCGCTACGAATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTGGACGCAATCCGGAAGGCATGTGCATCCTTAGAACCAAACTATCAGCCTCCAGTAACTTTCATCATTGTACAAAAAAGACATCATACTCGGTTATTCCCAAACAACCATAGAGACAGGAGTAGCACGGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTCGATACTAAAATTTGCCATCCAACGGAGTTTGATTTTTATCTCTGCAGTCATGCTGGAATCCAGGGTACTAGTCGGCCAGCTCACTATCATGTTCTATGGGACGAAAACAATTTCACAGCAGATGGAATCCAATCTTTAACAAACAATCTTTGTTATACATATGCTAGGTGCACACGATCCGTATCCGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCCTTTCGAGCTCGTTTCTATATGGAACCAGATATCCAACAAGAGAATGGTTCTTCAGGTGATGGTAATTCTAGTCATAATAGTTCCAAGGGAACAACAAGAGCAGCTGGAGAATGCGGTGTTAAGCCATTACCAGCTTTAAAAGATAATGTTAAGAGAGTGATGTTTTACTGTTAA 2907 0.4039 MPVRQMKESSEQHIVIKTNLQNPKNQPKASQNGKAPPPPPTSPQAKNKGRRRGRGGRKSDQVEILMRPSSRPCTAITSTSNGYNNSSNIDVGFPTSSKSLNFAPRPGYGTVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFSWKDFKIKLVDEEDGVNCPKRVKEYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRKPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKGLRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILQTIQHNAYDQDPYAKEFGINISEKLASVEARILPAPWLKYHESGKEKNCLPHVGQWNMMNKKMINGMAVNRWACINFSKSVQDSVARTFCNDLALMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSYRIPLVSDIPTIIFGADVTHPENGEDTSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISYRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFPNNHRDRSSTDKSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDIQQENGSSGDGNSSHNSSKGTTRAAGECGVKPLPALKDNVKRVMFYC 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05525 968 SMART PAZ_2_a_3 314 446 IPR003100 GO:0005515
Trre1g05525 968 FunFam Protein argonaute-2 303 429 - -
Trre1g05525 968 Pfam PAZ domain 336 440 IPR003100 GO:0005515
Trre1g05525 968 Pfam Argonaute linker 2 domain 450 496 IPR032472 -
Trre1g05525 968 SMART Piwi_a_2 598 919 IPR003165 GO:0003676
Trre1g05525 968 ProSiteProfiles Piwi domain profile. 598 919 IPR003165 GO:0003676
Trre1g05525 968 CDD Piwi_ago-like 468 918 IPR045246 -
Trre1g05525 968 SUPERFAMILY Ribonuclease H-like 590 920 IPR012337 -
Trre1g05525 968 Gene3D - 667 968 IPR036397 GO:0003676
Trre1g05525 968 FunFam protein argonaute 10-like 667 968 - -
Trre1g05525 968 Gene3D paz domain 303 428 - -
Trre1g05525 968 Pfam Argonaute linker 1 domain 258 307 IPR014811 -
Trre1g05525 968 MobiDBLite consensus disorder prediction 1 62 - -
Trre1g05525 968 MobiDBLite consensus disorder prediction 923 944 - -
Trre1g05525 968 SUPERFAMILY PAZ domain 304 464 IPR036085 GO:0005515
Trre1g05525 968 Pfam N-terminal domain of argonaute 114 248 IPR032474 -
Trre1g05525 968 SMART DUF1785_2 257 309 IPR014811 -
Trre1g05525 968 FunFam Argonaute 10 488 661 - -
Trre1g05525 968 Pfam Mid domain of argonaute 507 584 IPR032473 -
Trre1g05525 968 Pfam Piwi domain 599 918 IPR003165 GO:0003676
Trre1g05525 968 MobiDBLite consensus disorder prediction 923 946 - -
Trre1g05525 968 Gene3D - 488 661 - -
Trre1g05525 968 ProSiteProfiles PAZ domain profile. 310 424 IPR003100 GO:0005515
Trre1g05525 968 MobiDBLite consensus disorder prediction 12 31 - -
Trre1g05525 968 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 91 920 - -
Trre1g05525 968 CDD PAZ_argonaute_like 309 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05525 Trre-Chr1 60681718 60687285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05525 98 968 Eukaryotic Initiation Factors Gene Family AT5G43810 87.385 0.0 1637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05525 K11593 - gmx:100816999 1751.1